PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019157-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 381aa    MW: 43209.4 Da    PI: 4.9511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019157-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.7e-5361331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+k+eg k+el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd+++++
  NNU_019157-RA   6 LPPGFRFHPTDEELVGYYLKRKMEGLKIEL-EVIPVIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATRSGYWKATGKDRKIVC 100
                    79****************************.99**************96434556788************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ +gl+ktLvfy grap g +tdWvmheyrl
  NNU_019157-RA 101 -QSSMTGLRKTLVFYLGRAPLGDRTDWVMHEYRL 133
                    .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-614156IPR003441NAC domain
PROSITE profilePS5100557.5146156IPR003441NAC domain
PfamPF023651.9E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MTGASLPPGF RFHPTDEELV GYYLKRKMEG LKIELEVIPV IDLYKFDPWE LPDKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATRSGYWK ATGKDRKIVC QSSMTGLRKT LVFYLGRAPL  120
GDRTDWVMHE YRLCDDPSQG SSNFQKAFAL CHVVKKNDQG QKMGDFQEPR GKRVGKTSAN  180
GKIMPTSFSS ELSSNCHKGS SQTARLYNGS NSSSSVTSPY EITRISDFEP ALTRNNHTDL  240
WITSDLILDS SKDYSQGQDA ASECFLQNEF QNSVTPQQHC GSAEISPTSS YCNLMDVEPT  300
DNFDAISCMS PYTGPMNYMS FYEDEDMEYQ NLEQMDLLRD PNPFINGQEA WNLAPICRSG  360
DGSLGESSGL WLQEDNLMVV M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B2e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A2e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B2e-56116212171NO APICAL MERISTEM PROTEIN
3swm_A3e-56116215174NAC domain-containing protein 19
3swm_B3e-56116215174NAC domain-containing protein 19
3swm_C3e-56116215174NAC domain-containing protein 19
3swm_D3e-56116215174NAC domain-containing protein 19
3swp_A3e-56116215174NAC domain-containing protein 19
3swp_B3e-56116215174NAC domain-containing protein 19
3swp_C3e-56116215174NAC domain-containing protein 19
3swp_D3e-56116215174NAC domain-containing protein 19
4dul_A2e-56116212171NAC domain-containing protein 19
4dul_B2e-56116212171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275272.10.0PREDICTED: NAC domain-containing protein 45-like
SwissprotO496971e-103NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1U8B3990.0A0A1U8B399_NELNU; NAC domain-containing protein 45-like
STRINGXP_010275272.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-105NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]