PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018850-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 155aa    MW: 17239 Da    PI: 7.5066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018850-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-191969255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +g+++AeIrd + ng  +r +lg+f taeeAa+a+++a+ +++g
  NNU_018850-RA 19 RYRGVRKRP-WGKFAAEIRDSTRNG--ARLWLGTFTTAEEAARAYDRAAYAIRG 69
                   6********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-361983IPR001471AP2/ERF domain
PROSITE profilePS5103223.961977IPR001471AP2/ERF domain
PfamPF008473.4E-131969IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-231978IPR016177DNA-binding domain
CDDcd000183.44E-181979No hitNo description
Gene3DG3DSA:3.30.730.103.2E-311978IPR001471AP2/ERF domain
PRINTSPR003673.2E-112031IPR001471AP2/ERF domain
PRINTSPR003673.2E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEGDAEGKMK QADQRREVRY RGVRKRPWGK FAAEIRDSTR NGARLWLGTF TTAEEAARAY  60
DRAAYAIRGP SAILNFPTQY QSSIHNDYPF SPASTGSSSS FSSSAFDNAE NLKERSNTTT  120
TTGPHPHGKQ VVFEIECLDD KLLEDLLGCE GNNNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2919801475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274789.11e-114PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8BEI01e-113A0A1U8BEI0_NELNU; ethylene-responsive transcription factor ERF098-like
STRINGXP_010274789.11e-113(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-17ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]