PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_018831-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35834.2 Da PI: 8.8067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.2e-19 | 48 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++q+G g+W++ ++ g+ R++k+c++rw +yl NNU_018831-RA 48 KGPWTPEEDQILINYIRQYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 95 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 101 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l NNU_018831-RA 101 RGNFTKEEEETIIKLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 146 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-27 | 39 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.606 | 43 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.16E-32 | 44 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 47 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-17 | 48 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.21E-12 | 50 | 95 | No hit | No description |
PROSITE profile | PS51294 | 26.4 | 96 | 150 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-27 | 99 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 101 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.35E-11 | 103 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
RERDRERKRD RDRKIKNSDQ IKKSEKGVWS LRSKMVRAPC CEKMGMKKGP WTPEEDQILI 60 NYIRQYGHGN WRALPKQAGL LRCGKSCRLR WTNYLRPDIK RGNFTKEEEE TIIKLHEMLG 120 NRWSAIAAKL PGRTDNEIKN VWHTHLKKRL RQYQTTTNTK RPSTGVPKRD TNTPKESHSV 180 NFPIIPAFEN PVYPPVSSPQ QSSSELSSVT ESSVITGENQ NTGIKDELVE SSETFPEIDE 240 SFWSGALSAE NSGIPVDYPA TTTDIGSQFQ YNPVYTTEPI SAYNWNNTDD GMDFWYNLFI 300 KAGEFQELPE L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 46 | 150 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 12 | RDRERKRDRDR |
2 | 145 | 151 | LKKRLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010274769.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9LTC4 | 1e-84 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A1U8BDN9 | 0.0 | A0A1U8BDN9_NELNU; myb-related protein Myb4-like | ||||
STRING | XP_010274769.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 5e-83 | myb domain protein 14 |