PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018637-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 334aa MW: 37167.4 Da PI: 9.9461

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018637-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.7	2.3e-21	31	121	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +Wt++e+ aLi+ +re++ +lrrg+lk+ +W+ev++++ r +++++qC++k e+l+kry+ +k+++ + ss+++yf++++a NNU_018637-RA 31 CWTHEETVALIDSYREKWYSLRRGNLKASHWQEVADAVarrcRFATPSKTSVQCRHKVEKLRKRYRTEKQRSLATPGRFSSSWVYFRKMDA 121 8********************************99965444445599*******************9998999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.6E-23	30	122	No hit	No description
PROSITE profile	PS50090	6.481	32	92	IPR017877	Myb-like domain
SMART	SM00595	1.3E-9	39	127	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAASSSSAQD PTPTASARPT PQPSRRLPPP CWTHEETVAL IDSYREKWYS LRRGNLKASH 60 WQEVADAVAR RCRFATPSKT SVQCRHKVEK LRKRYRTEKQ RSLATPGRFS SSWVYFRKMD 120 AMEKGPSATA NSDSSDNDDN GEDDEDENED DTNIPTTNTR SLHRLMTNGG AARGGGGGGS 180 GGGLGFRLRI PNRPSPVQPV TGFRSKNYGR VDELPNPNPN INTWYFNGSS STRSGFGKRR 240 NDDDGGGGGG GAEEIKRETD PVSEMVSSIK LLGEGFVKME QMKIEMAREI ERMRMEMEMK 300 RTEMILESQE RIVDAFTKGF SGKKKVKRMS SPDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274504.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1U8B505	0.0	A0A1U8B505_NELNU; trihelix transcription factor ASIL2
STRING	XP_010274504.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-47	Trihelix family protein