PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018624-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 364aa MW: 40115 Da PI: 5.3335

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018624-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l++ +++ G g+W++ ++ g++R++k+c++rw +yl NNU_018624-RA 15 KGPWTPEEDQMLIEFIQKNGHGSWRALPSLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.2	7.7e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+++++d++ lG++ W++Ia++++ gRt++++k++w+++l NNU_018624-RA 68 RGKFSDEEEKIIIDLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-24	6	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.331	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-31	12	109	IPR009057	Homeodomain-like
SMART	SM00717	8.8E-15	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.06E-11	17	62	No hit	No description
PROSITE profile	PS51294	26.763	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-27	66	117	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-17	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-16	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	5.97E-13	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MMGRSPCCDE SGLKKGPWTP EEDQMLIEFI QKNGHGSWRA LPSLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSDEEEKIII DLHSVLGNKW SAIASHLPGR TDNEIKNFWN THLRKKLLNM 120 GIDPVTHRPR TDLNLLANLP QLLAITSLNN LMHPLDALRL QAEAAQLARN QLLQNLLQAV 180 NGSTPPNLGA VLNLQGSSSP NQGYNPAEYP QPNTQLEGLV NNNLQAQALP TANPLAPALH 240 HAHQMSTNFA NSGVIQQPSN DGLIPENSAY FGGVCSTLIN NEYVNNISNN NLNSSDGIEQ 300 MPPLVSASPE MEEMKPHTNI CDPPSTSTTF DTWGELNLDD DGSDYWGDML EYVPHFSSLS 360 PSIS

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MMGRSPCCDE SGLKKGPWTP EEDQMLIEFI QKNGHGSWRA LPSLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSDEEEKIII DLHSVLGNKW SAIASHLPGR TDNEIKNFWN THLRKKLLNM  120
GIDPVTHRPR TDLNLLANLP QLLAITSLNN LMHPLDALRL QAEAAQLARN QLLQNLLQAV  180
NGSTPPNLGA VLNLQGSSSP NQGYNPAEYP QPNTQLEGLV NNNLQAQALP TANPLAPALH  240
HAHQMSTNFA NSGVIQQPSN DGLIPENSAY FGGVCSTLIN NEYVNNISNN NLNSSDGIEQ  300
MPPLVSASPE MEEMKPHTNI CDPPSTSTTF DTWGELNLDD DGSDYWGDML EYVPHFSSLS  360
PSIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-31	13	117	5	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274278.1	0.0	PREDICTED: transcription factor MYB39-like
TrEMBL	A0A1U8BD82	0.0	A0A1U8BD82_NELNU; transcription factor MYB39-like
STRING	XP_010274278.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	7e-82	myb domain protein 93