PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018306-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 681aa MW: 79790.7 Da PI: 6.379

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018306-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	84	170	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA+++GF+ k++s +sk n+e+++ tf+Cs++gk++e+ + ++r+ ++gCka+l++kk+kdgkw+v ++ +eHnHel p NNU_018306-RA 84 SFYREYARMAGFESIKKNSIRSKANREFISTTFTCSRQGKKKESGDX----ANQRPCYKIGCKASLHMKKTKDGKWVVFSFIKEHNHELLP 170 5****************************************9877....999********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-23	84	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-27	271	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.186	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.4E-6	551	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MEIDLETHVD EHEMENVGLN ADGDEHVMED IGLNFGGNTM TDGEVSGEKE SDMSSTRRFV 60 VTEENVNLEP YEGMEFESRD EAYSFYREYA RMAGFESIKK NSIRSKANRE FISTTFTCSR 120 QGKKKESGDX ANQRPCYKIG CKASLHMKKT KDGKWVVFSF IKEHNHELLP PKSYYFRSYE 180 STNSINRDNM DGLMHMMPMH NGEYLERDVE NQRHLYLEAG DRQAMLEYFT CMQEENTNFF 240 YAIDLDDEQR LRNVFWVDPK GRHDYTYFGD IVSFDTTYIK NRYRMPFVPF IGANHHFQPT 300 FFGCALIADE TKSTFLWIMR TWLRAMGGVA PKVLVTDQVE SMKAAIVEIF PSTHHLFGLW 360 HILGKIPDKL SHVIKNHENF MAEFNKCIYR SWTDEEFESQ WWKIVQTFEL GEDQWMKSLY 420 EDRKKWAPTY MKDTFFAGMS AGQRSKTINS SFDKYLTRKT MLKEFFQQYK VFLQDRYEEE 480 SKAEIDTWHG IPTLKSHSPY EKQMSTIYTH EIFKMFQVEV LGIVACQPKK ERQDGTTMIF 540 RVQDFEAEHD FIVTWDESKS EISCLCHLFE YKGFLCRHAM VVFQFATVST IPPHYILKQW 600 TKDAKSRYSX RVRTEVVQSR VQRYNDLCQR ALKLGEDGSI SQESYNIAVC ALEEAIRQCT 660 IVNSSIKGSA GNRKSVKGQG Q

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MEIDLETHVD EHEMENVGLN ADGDEHVMED IGLNFGGNTM TDGEVSGEKE SDMSSTRRFV  60
VTEENVNLEP YEGMEFESRD EAYSFYREYA RMAGFESIKK NSIRSKANRE FISTTFTCSR  120
QGKKKESGDX ANQRPCYKIG CKASLHMKKT KDGKWVVFSF IKEHNHELLP PKSYYFRSYE  180
STNSINRDNM DGLMHMMPMH NGEYLERDVE NQRHLYLEAG DRQAMLEYFT CMQEENTNFF  240
YAIDLDDEQR LRNVFWVDPK GRHDYTYFGD IVSFDTTYIK NRYRMPFVPF IGANHHFQPT  300
FFGCALIADE TKSTFLWIMR TWLRAMGGVA PKVLVTDQVE SMKAAIVEIF PSTHHLFGLW  360
HILGKIPDKL SHVIKNHENF MAEFNKCIYR SWTDEEFESQ WWKIVQTFEL GEDQWMKSLY  420
EDRKKWAPTY MKDTFFAGMS AGQRSKTINS SFDKYLTRKT MLKEFFQQYK VFLQDRYEEE  480
SKAEIDTWHG IPTLKSHSPY EKQMSTIYTH EIFKMFQVEV LGIVACQPKK ERQDGTTMIF  540
RVQDFEAEHD FIVTWDESKS EISCLCHLFE YKGFLCRHAM VVFQFATVST IPPHYILKQW  600
TKDAKSRYSX RVRTEVVQSR VQRYNDLCQR ALKLGEDGSI SQESYNIAVC ALEEAIRQCT  660
IVNSSIKGSA GNRKSVKGQG Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274043.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1U8B042	0.0	A0A1U8B042_NELNU; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_010274043.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]