PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018197-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 204aa    MW: 21947.4 Da    PI: 5.3448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018197-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-192877255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   gykGVr +k +g+WvAe+r p++   r r++lg+++t+++Aa+a++aa  +l+g
  NNU_018197-RA 28 GYKGVRMRK-WGKWVAEVRLPKS---RDRIWLGSYDTPDKAARAYDAAVFCLRG 77
                   8******99.**********854...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-132877IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-202886IPR016177DNA-binding domain
SMARTSM003801.1E-322891IPR001471AP2/ERF domain
PROSITE profilePS5103222.0492885IPR001471AP2/ERF domain
CDDcd000186.18E-272987No hitNo description
Gene3DG3DSA:3.30.730.101.2E-282986IPR001471AP2/ERF domain
PRINTSPR003677.1E-92940IPR001471AP2/ERF domain
PRINTSPR003677.1E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVKPSSTGSG GLLSAERKDH AVKGSNGGYK GVRMRKWGKW VAEVRLPKSR DRIWLGSYDT  60
PDKAARAYDA AVFCLRGPSC KLNFPTTPPD IPSAGDLTPS QIQAAAASYA HQVPIAPEEV  120
RPGRTMVATA ETAVVDSVSM AGGCERIESL TFLPENRYVY DGSSFDGFPA NNYFPAEEER  180
GDSGPGVEET DTGGATFYQS PWTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-152285872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273874.11e-150PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ9C5912e-36ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A1U8B3J71e-149A0A1U8B3J7_NELNU; ethylene-responsive transcription factor RAP2-9-like
STRINGXP_010273874.11e-150(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.18e-39ERF family protein