PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_018143-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24191 Da PI: 4.7514 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.9e-18 | 12 | 66 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f++eq++ Le+ Fe ++++ ++++ +LA++l+L+ rq+++WFqN+Ra+ k NNU_018143-RA 12 TNKRRFSTEQITLLESIFETESKLETQKKLQLARQLSLQPRQISIWFQNKRARCK 66 56789************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.4 | 2.9e-36 | 13 | 104 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq++lLE+ Fe+e+kLe+++K +lar+L lqprq+ +WFqn+RAR k+kql +dy+ L+++yd l+++ ++L+ke+++L++el++ NNU_018143-RA 13 NKRRFSTEQITLLESIFETESKLETQKKLQLARQLSLQPRQISIWFQNKRARCKSKQLQQDYAILRANYDVLASRFDSLNKEKQSLQTELQK 104 79**************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.487 | 8 | 68 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-17 | 10 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.9E-15 | 10 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.95E-14 | 11 | 69 | No hit | No description |
Pfam | PF00046 | 3.8E-15 | 12 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-17 | 14 | 75 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 43 | 66 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.9E-16 | 68 | 109 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDSLSMTCIT KTNKRRFSTE QITLLESIFE TESKLETQKK LQLARQLSLQ PRQISIWFQN 60 KRARCKSKQL QQDYAILRAN YDVLASRFDS LNKEKQSLQT ELQKLRGLMD ELEEDRRGSG 120 SDFSGNGTHG SSNDDKQDAQ QESQVKSSLL PESPNRMVLG LCDDQQNEIF RDYPQPQEEA 180 ALVNVIEPAN AFISGDLFQL SFNDALWWEF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010273803.1 | 1e-153 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A1U8BBB5 | 1e-152 | A0A1U8BBB5_NELNU; homeobox-leucine zipper protein ATHB-7-like | ||||
STRING | XP_010273803.1 | 1e-153 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-43 | homeobox 7 |