PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017337-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 977aa MW: 108546 Da PI: 7.609

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017337-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.7	3.4e-09	216	274	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y NNU_017337-RA 216 SRGKTRAEKDREVAEFLNRHGVQRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 274 6788999999**************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	7.57E-15	831	962	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	5.4E-5	832	927	No hit	No description
CDD	cd00180	6.39E-11	839	963	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MGDKGGGGEA IKKQQRSSSP TLEESVETRQ QQITAAPFIS APPYVPTGGN SVQLEQQQQC 60 EAVNPKRPRY ATGQWKLLPS SSQQQQRNPQ MTEINSESSP SRTDNPQAQS HTTAESSSPT 120 ASSPSHSPLP SLSAASGHDT NKPDSQQFHQ QLRKGKYVSP VWKPNEMLWL ARAWRIQYQG 180 GRGDGCASSS GGEQANETPT SCGVGGGGDV VTMPSSRGKT RAEKDREVAE FLNRHGVQRD 240 AKTAGTKWDN MLGEFRKVYE WERGGEREQV GKSYFRLSPY ERKIHRLPAS FDEEVFEELS 300 QFMGLRTRSS QSRGPAAVVG GDNGRSAVAG PKALPLPPPP PPFKDDDLSL SAKIKQPGTT 360 ATTEAFLHVG RGNLSGVETS LEIVAPSSSS SSKEFRRIGK IKMTWEESVT LWAEEGEYQR 420 GRVKFQGSSF LNADELAFLD DTMVACTMEA FEDGPLKGFS VDRFVCGQQV KVFGRRKPST 480 ATSGLSERVQ LPAVTEPSIR SIPPWEYQDP SEYYLGCLRS PPTTLPSLFE LSWHLQEPPS 540 EDFRFPLRKD VYRDLPQGKE LFFTTSTELL DCRGIMFDTL SPVVRSNPSI SAGTATSRDS 600 FIGLWDDCIN RVVSKFCSLE MVIVRKPSSS PTTTETLQDQ WPNVTGFVRN FCLWRGEETD 660 QVREGNVDPS SSIVEKLLWT YLDLPYILGY YAIGYSVIFC ALSRSQDRVL RTDLYSVDLS 720 TPTERLKALV PCWRIAGLLP LLADRCFNSN SNVGHTYKQL AYSDFERLDL GGGNVIEMTP 780 NTMKRSFSSR RKWAAVKEIY DFLDHRIPHA EYVIRASEKE LALIFKPRGC KSKPTSCEQL 840 VEALKYVTKA LVALHDLSFM HRDLGWDKVM RRSDRENEWF VGGFDEAVGA PQIYPHGAMV 900 GGGRQAPEMA RGLHGVKVDV WGVGQLIRTC GLAVPKLLRE LQNRCLDQNP EQRPTAADCY 960 HHLLQLQSSL SAAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MGDKGGGGEA IKKQQRSSSP TLEESVETRQ QQITAAPFIS APPYVPTGGN SVQLEQQQQC  60
EAVNPKRPRY ATGQWKLLPS SSQQQQRNPQ MTEINSESSP SRTDNPQAQS HTTAESSSPT  120
ASSPSHSPLP SLSAASGHDT NKPDSQQFHQ QLRKGKYVSP VWKPNEMLWL ARAWRIQYQG  180
GRGDGCASSS GGEQANETPT SCGVGGGGDV VTMPSSRGKT RAEKDREVAE FLNRHGVQRD  240
AKTAGTKWDN MLGEFRKVYE WERGGEREQV GKSYFRLSPY ERKIHRLPAS FDEEVFEELS  300
QFMGLRTRSS QSRGPAAVVG GDNGRSAVAG PKALPLPPPP PPFKDDDLSL SAKIKQPGTT  360
ATTEAFLHVG RGNLSGVETS LEIVAPSSSS SSKEFRRIGK IKMTWEESVT LWAEEGEYQR  420
GRVKFQGSSF LNADELAFLD DTMVACTMEA FEDGPLKGFS VDRFVCGQQV KVFGRRKPST  480
ATSGLSERVQ LPAVTEPSIR SIPPWEYQDP SEYYLGCLRS PPTTLPSLFE LSWHLQEPPS  540
EDFRFPLRKD VYRDLPQGKE LFFTTSTELL DCRGIMFDTL SPVVRSNPSI SAGTATSRDS  600
FIGLWDDCIN RVVSKFCSLE MVIVRKPSSS PTTTETLQDQ WPNVTGFVRN FCLWRGEETD  660
QVREGNVDPS SSIVEKLLWT YLDLPYILGY YAIGYSVIFC ALSRSQDRVL RTDLYSVDLS  720
TPTERLKALV PCWRIAGLLP LLADRCFNSN SNVGHTYKQL AYSDFERLDL GGGNVIEMTP  780
NTMKRSFSSR RKWAAVKEIY DFLDHRIPHA EYVIRASEKE LALIFKPRGC KSKPTSCEQL  840
VEALKYVTKA LVALHDLSFM HRDLGWDKVM RRSDRENEWF VGGFDEAVGA PQIYPHGAMV  900
GGGRQAPEMA RGLHGVKVDV WGVGQLIRTC GLAVPKLLRE LQNRCLDQNP EQRPTAADCY  960
HHLLQLQSSL SAAAGGY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272624.1	0.0	PREDICTED: uncharacterized protein LOC104608361
TrEMBL	A0A1U8B9B1	0.0	A0A1U8B9B1_NELNU; uncharacterized protein LOC104608361
STRING	XP_010272624.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-07	Trihelix family protein