PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017171-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 290aa MW: 31783.3 Da PI: 9.9794

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017171-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	19	79	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+s+ NNU_017171-RA 19 PQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRSK 79 78999***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.4E-33	21	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-17	27	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MKGLQQHDRR VKPPENQQPQ QPQKCPRCES LNTKFCYYNN YSLSQPRYFC KTCRRYWTQG 60 GTLRNVPVGG GCRKGKRSKR SYPADNLQSQ LPSVTQQSSQ QQQFSSAATS TSTVMTTTGS 120 NPTLRTKGAD LMIPSPMPPM APNPSSVYYP SGGSFLSSLA ALQSFNQPMN VGGDFGGSNL 180 ALLQGFSLPS FSAQQQQLFQ MGARDKTIHQ LLPSEENAIQ QSRPSASNQE WHHQSFINPI 240 TNSIASEAGY WSSNNSNNST SGPSLNPSQW VRPDAPGFVP PSSSSSQSFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272391.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like isoform X1
TrEMBL	A0A1U8B8P8	0.0	A0A1U8B8P8_NELNU; dof zinc finger protein DOF5.4-like isoform X1
STRING	XP_010272391.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	9e-23	Dof family protein