PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017170-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 351aa MW: 38001.7 Da PI: 7.6527

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017170-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.8e-40	47	106	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWtkGG+lrnvPvGgg+rknk+++ NNU_017170-RA 47 DQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTKGGTLRNVPVGGGCRKNKRVK 106 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	46	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-34	47	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MIPLSEGLLG PCEKMGIPSN SNDWPQKVDE TGLMASSVRI MEKPGSDQAL KCPRCDSSNT 60 KFCYYNNYSL SQPRHFCKAC KRYWTKGGTL RNVPVGGGCR KNKRVKRSAP TTEASSSSQT 120 TPPTPPPPPS RVDVSTASNH ITSPLFYGLS GNPSDMNLPF PSFHPRVSNM ESKPTSCAGY 180 DLLPQLNALG LGFPSATMNA DTHGDEYRTG FDPATQIQDV VTSTSLLSNY SSLLGSSSST 240 STVSLLASSL QQQKLILGGL KERRPANNFQ ALLPFEDLQM DGNGDLGVVL KEVKMEEGND 300 RMNNKVDWNV PCQNTIEPIG STADPSLYWN STAVGAWPYL NNFGSSVTSL I

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MIPLSEGLLG PCEKMGIPSN SNDWPQKVDE TGLMASSVRI MEKPGSDQAL KCPRCDSSNT  60
KFCYYNNYSL SQPRHFCKAC KRYWTKGGTL RNVPVGGGCR KNKRVKRSAP TTEASSSSQT  120
TPPTPPPPPS RVDVSTASNH ITSPLFYGLS GNPSDMNLPF PSFHPRVSNM ESKPTSCAGY  180
DLLPQLNALG LGFPSATMNA DTHGDEYRTG FDPATQIQDV VTSTSLLSNY SSLLGSSSST  240
STVSLLASSL QQQKLILGGL KERRPANNFQ ALLPFEDLQM DGNGDLGVVL KEVKMEEGND  300
RMNNKVDWNV PCQNTIEPIG STADPSLYWN STAVGAWPYL NNFGSSVTSL I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272390.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U8B7Y1	0.0	A0A1U8B7Y1_NELNU; dof zinc finger protein DOF1.4-like
STRING	XP_010272390.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-35	Dof family protein