PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017018-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 236aa    MW: 26148.7 Da    PI: 8.4804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017018-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-1468114354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r+h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+++++k+L
  NNU_017018-RA  68 RNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVIQHVKEL 114
                    78*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.74965114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-1468117No hitNo description
PfamPF000103.1E-1268114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1569123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1569121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-1471120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.0E-5152216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQPENLPGSS ELYRLLLAGN GGMDVGGYGI PSSFDFTANA SFSGSSFYPF EMSGITDMPQ  60
ARALAASRNH KEAEKRRRER INSHLDKLRT LLPCNSKTDK ASLLAKVIQH VKELKQQTSE  120
IPELELFPSE TDEITVFPGD FSGTGRLILK ASLCCEDRSD LLPDLIETLK SLRLKTIRAE  180
MATLGGRVRN VLVVAGEGDN SDESIGFLRD ALKTLVERSN SGDRSKRRRM IDRRTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271836.11e-172PREDICTED: transcription factor bHLH106-like
SwissprotO806741e-72BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1U8AV531e-171A0A1U8AV53_NELNU; transcription factor bHLH106-like
STRINGXP_010271836.11e-172(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]