PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016926-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 582aa MW: 65157.4 Da PI: 8.1597

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016926-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	268	309	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L NNU_016926-RA 268 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQEL 309 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-7	265	346	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-8	265	311	No hit	No description
PROSITE profile	PS50217	9.232	267	311	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	268	309	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.04E-20	269	319	No hit	No description
SuperFamily	SSF57959	7.5E-7	269	311	No hit	No description
PROSITE pattern	PS00036	0	272	287	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.8E-31	354	429	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
WPYCALTTIK KSYCANYQLS GGLVARKLGS QRRCDFEPLY QLSPPLRSTL EVDAISICDE 60 APQRQTSRTP EHTRQIEVFP LTHGLRRRFC MASHRFGENG LSADSGSSNY PTFHGISHPV 120 TNYINQQESA FDLGELEEAI VLQGVKSRND EAKRTFLPAR PAATLEMFPS WPMRFQQTPR 180 GSSRSGESTD SGSAQNTFSF QTDSQLEPES PLSEKASNQA IDQKPLQQHH QIEMANDTSK 240 TGASPIQQAK PSEKRRGAGS ASEKTLDAKT LRRLAQNREA ARKSRLRKKA YVQQLETSRI 300 KLTQLEQELQ RARSQGLFLS GAGGAAGGSG TIISSGAAMF DMEYARWLED DQRHMSELRT 360 ALQARLSDGD LRIILDGYLA HYDEIFRLKG IAAKSDVFHL VTGMWATPAE RCFLWMGGFR 420 PSELIKILLP QLDTLTEQQF MGICSLQQSS QQAEEALSQG LEQLQQSLAD TVASGSLSEG 480 THVGNYMDQM AMALSKLSNL EGFVRQADNL RQQTLHQMRR ILTIRQAARC FLAIGEYYVR 540 LRALSSLWTS RPRENWISDD NSSQTTMEIQ MVPPCHNPFS TF

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

WPYCALTTIK KSYCANYQLS GGLVARKLGS QRRCDFEPLY QLSPPLRSTL EVDAISICDE  60
APQRQTSRTP EHTRQIEVFP LTHGLRRRFC MASHRFGENG LSADSGSSNY PTFHGISHPV  120
TNYINQQESA FDLGELEEAI VLQGVKSRND EAKRTFLPAR PAATLEMFPS WPMRFQQTPR  180
GSSRSGESTD SGSAQNTFSF QTDSQLEPES PLSEKASNQA IDQKPLQQHH QIEMANDTSK  240
TGASPIQQAK PSEKRRGAGS ASEKTLDAKT LRRLAQNREA ARKSRLRKKA YVQQLETSRI  300
KLTQLEQELQ RARSQGLFLS GAGGAAGGSG TIISSGAAMF DMEYARWLED DQRHMSELRT  360
ALQARLSDGD LRIILDGYLA HYDEIFRLKG IAAKSDVFHL VTGMWATPAE RCFLWMGGFR  420
PSELIKILLP QLDTLTEQQF MGICSLQQSS QQAEEALSQG LEQLQQSLAD TVASGSLSEG  480
THVGNYMDQM AMALSKLSNL EGFVRQADNL RQQTLHQMRR ILTIRQAARC FLAIGEYYVR  540
LRALSSLWTS RPRENWISDD NSSQTTMEIQ MVPPCHNPFS TF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271664.1	0.0	PREDICTED: transcription factor TGA2.2-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U8B636	0.0	A0A1U8B636_NELNU; transcription factor TGA2.2-like
STRING	XP_010271664.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-175	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]