PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016873-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 282aa    MW: 32407.4 Da    PI: 8.804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016873-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.85.5e-4641351128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    +ppGfrF Pt+eelv++yL +k+eg   +le+vi+ vdiy+++Pw+Lp+     ++++ ++w+fFs+r++++a+g r+nr+t+sgyWkatg+   v
  NNU_016873-RA   4 VPPGFRFYPTEEELVSFYLYNKLEGIGPDLERVIPIVDIYELDPWQLPQvsgeLCHGDPEQWFFFSPRQEREARGGRPNRTTNSGYWKATGSPGLV 99 
                    69****************************99****************645653344677************************************ PP

            NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +s++++ +glkkt+vfykg+ap+g+kt+W m+eyr+
  NNU_016873-RA 100 YSSGNRIIGLKKTMVFYKGKAPTGTKTKWKMNEYRA 135
                    **********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-503145IPR003441NAC domain
PROSITE profilePS5100549.164196IPR003441NAC domain
PfamPF023657.1E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEDVPPGFRF YPTEEELVSF YLYNKLEGIG PDLERVIPIV DIYELDPWQL PQVSGELCHG  60
DPEQWFFFSP RQEREARGGR PNRTTNSGYW KATGSPGLVY SSGNRIIGLK KTMVFYKGKA  120
PTGTKTKWKM NEYRATQGEA TSSSSAAPLV RTKKEIKYYT QRLQILCKQI VYNRLRNPFM  180
STHLRHEFSL CRVYVKSGCL RAFDRRPVGA RTSEAPMQQG HVDRGTTSHR NISSSLEKLS  240
SPDTSSSGDQ AHDDSTQLGE SVDWKMTNEF NPLWEWEQLN WF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-37413717144NO APICAL MERISTEM PROTEIN
1ut4_B4e-37413717144NO APICAL MERISTEM PROTEIN
1ut7_A4e-37413717144NO APICAL MERISTEM PROTEIN
1ut7_B4e-37413717144NO APICAL MERISTEM PROTEIN
3swm_A4e-37413720147NAC domain-containing protein 19
3swm_B4e-37413720147NAC domain-containing protein 19
3swm_C4e-37413720147NAC domain-containing protein 19
3swm_D4e-37413720147NAC domain-containing protein 19
3swp_A4e-37413720147NAC domain-containing protein 19
3swp_B4e-37413720147NAC domain-containing protein 19
3swp_C4e-37413720147NAC domain-containing protein 19
3swp_D4e-37413720147NAC domain-containing protein 19
4dul_A4e-37413717144NAC domain-containing protein 19
4dul_B4e-37413717144NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271606.11e-180PREDICTED: NAC domain-containing protein 90-like isoform X1
SwissprotQ9FMR36e-83NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1U8AU621e-179A0A1U8AU62_NELNU; NAC domain-containing protein 90-like isoform X1
STRINGXP_010271606.11e-180(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-85NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]