PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_016873-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 32407.4 Da PI: 8.804 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.8 | 5.5e-46 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrF Pt+eelv++yL +k+eg +le+vi+ vdiy+++Pw+Lp+ ++++ ++w+fFs+r++++a+g r+nr+t+sgyWkatg+ v NNU_016873-RA 4 VPPGFRFYPTEEELVSFYLYNKLEGIGPDLERVIPIVDIYELDPWQLPQvsgeLCHGDPEQWFFFSPRQEREARGGRPNRTTNSGYWKATGSPGLV 99 69****************************99****************645653344677************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++ +glkkt+vfykg+ap+g+kt+W m+eyr+ NNU_016873-RA 100 YSSGNRIIGLKKTMVFYKGKAPTGTKTKWKMNEYRA 135 **********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-50 | 3 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.16 | 4 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MEDVPPGFRF YPTEEELVSF YLYNKLEGIG PDLERVIPIV DIYELDPWQL PQVSGELCHG 60 DPEQWFFFSP RQEREARGGR PNRTTNSGYW KATGSPGLVY SSGNRIIGLK KTMVFYKGKA 120 PTGTKTKWKM NEYRATQGEA TSSSSAAPLV RTKKEIKYYT QRLQILCKQI VYNRLRNPFM 180 STHLRHEFSL CRVYVKSGCL RAFDRRPVGA RTSEAPMQQG HVDRGTTSHR NISSSLEKLS 240 SPDTSSSGDQ AHDDSTQLGE SVDWKMTNEF NPLWEWEQLN WF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-37 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-37 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-37 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-37 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swm_B | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swm_C | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swm_D | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swp_A | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swp_B | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swp_C | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
3swp_D | 4e-37 | 4 | 137 | 20 | 147 | NAC domain-containing protein 19 |
4dul_A | 4e-37 | 4 | 137 | 17 | 144 | NAC domain-containing protein 19 |
4dul_B | 4e-37 | 4 | 137 | 17 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010271606.1 | 1e-180 | PREDICTED: NAC domain-containing protein 90-like isoform X1 | ||||
Swissprot | Q9FMR3 | 6e-83 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1U8AU62 | 1e-179 | A0A1U8AU62_NELNU; NAC domain-containing protein 90-like isoform X1 | ||||
STRING | XP_010271606.1 | 1e-180 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-85 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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