PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016870-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 273aa    MW: 30818.1 Da    PI: 6.5327
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016870-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1492.4e-4641351128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    lppG+rF Pt+eel+ +yL++k+ g++ +le+vi+ vdiy+++Pw+Lpk     ++++ ++w+fF++r++++a+g r+nr+t+sgyWkatg+   v
  NNU_016870-RA   4 LPPGYRFYPTEEELILFYLNNKLGGSRQDLERVIPVVDIYELDPWQLPKisgaLCNGDPEQWFFFTPRQEREARGGRPNRTTNSGYWKATGSPGYV 99 
                    79****************************99****************656654445777************************************ PP

            NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +s++++ +g+kkt+vfy+g+ap+gekt+W m+eyr+
  NNU_016870-RA 100 YSSSNRIIGVKKTMVFYNGKAPTGEKTKWKMNEYRA 135
                    **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-503162IPR003441NAC domain
PROSITE profilePS5100550.6184162IPR003441NAC domain
PfamPF023653.3E-245134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEDLPPGYRF YPTEEELILF YLNNKLGGSR QDLERVIPVV DIYELDPWQL PKISGALCNG  60
DPEQWFFFTP RQEREARGGR PNRTTNSGYW KATGSPGYVY SSSNRIIGVK KTMVFYNGKA  120
PTGEKTKWKM NEYRAIQGEA TSSGSASPLL RHEFSLCRVY VRSGRLRAFD RRPPAATTSL  180
APIQRGNVER RTADQQNPAT VDKPSSPESS FSGDQAHPSR QNPAIVDKPS SSSESSSSGG  240
DQAHPSQLGE SIDWEMTEDF HSLWEYWEQL NWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-37416017163NO APICAL MERISTEM PROTEIN
1ut4_B1e-37416017163NO APICAL MERISTEM PROTEIN
1ut7_A1e-37416017163NO APICAL MERISTEM PROTEIN
1ut7_B1e-37416017163NO APICAL MERISTEM PROTEIN
4dul_A1e-37416017163NAC domain-containing protein 19
4dul_B1e-37416017163NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271600.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A1U8B5X90.0A0A1U8B5X9_NELNU; NAC domain-containing protein 90-like
STRINGXP_010271600.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-84NAC domain containing protein 61