PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_016649-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20536.1 Da PI: 4.2787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r +lg+f+t +Aa a++ a++kl+g NNU_016649-RA 13 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSRDAAIAYDSAARKLYG 62 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.30E-28 | 12 | 72 | No hit | No description |
SMART | SM00380 | 2.1E-31 | 13 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-30 | 13 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.694 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 13 | 70 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-12 | 13 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MRGKGGPENA LCTYRGVRQR TWGKWVAEIR EPNRGARLWL GTFDTSRDAA IAYDSAARKL 60 YGKFAKLNLP ELWTEAESQA GSISESVPVP VPSSTTTTQQ AAESLLKVEP EMGSSSDGNN 120 LVEDGMEGIW RDMNLSLLPE IQEFPWMELP TTTMEFPVVM KDPGIWSQEL LDDTTGWNAL 180 ELPW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-18 | 14 | 70 | 6 | 63 | ATERF1 |
3gcc_A | 9e-18 | 14 | 70 | 6 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010271525.1 | 1e-132 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A1U8B6K5 | 1e-131 | A0A1U8B6K5_NELNU; dehydration-responsive element-binding protein 2D-like | ||||
STRING | XP_010271525.1 | 1e-132 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 5e-42 | ERF family protein |