PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016629-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 139aa    MW: 16349.6 Da    PI: 10.3785
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016629-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.4e-28959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++nrqvt+skRr gi KKA EL vLCdaev++i+fsstgk+ ey+s
  NNU_016629-RA  9 KRIENSTNRQVTYSKRRGGIVKKARELTVLCDAEVSLIMFSSTGKFSEYIS 59
                   79***********************************************86 PP
2K-box68.81.7e-2371139169
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    yq+ sg +l+++++e++q++l+k k+ ++nLqre+R+++G dL+++s++eL+ Leq+Le+slk +R++K
  NNU_016629-RA  71 YQQVSGINLWSSHYERMQEHLNKQKEINNNLQREIRRRMGGDLDDMSIEELRGLEQNLENSLKVVRERK 139
                    7899999*************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.076161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-38295IPR002100Transcription factor, MADS-box
CDDcd002651.73E-37280No hitNo description
PRINTSPR004043.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-1482139IPR002487Transcription factor, K-box
PROSITE profilePS5129712.93284139IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRGGIVK KARELTVLCD AEVSLIMFSS TGKFSEYISH  60
TTTTKKIFDR YQQVSGINLW SSHYERMQEH LNKQKEINNN LQREIRRRMG GDLDDMSIEE  120
LRGLEQNLEN SLKVVRERK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18173171MEF2C
5f28_B5e-18173171MEF2C
5f28_C5e-18173171MEF2C
5f28_D5e-18173171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0486451e-169GU048645.1 Nelumbo nucifera voucher FLAS:Yoo & Koh 1002 AP3-2 (AP3-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271509.11e-96PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
RefseqXP_019055004.12e-97PREDICTED: floral homeotic protein DEFICIENS-like isoform X2
SwissprotQ003J21e-71TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1U8AXR82e-95A0A1U8AXR8_NELNU; floral homeotic protein DEFICIENS-like isoform X1
TrEMBLA0A1U8Q8825e-96A0A1U8Q882_NELNU; floral homeotic protein DEFICIENS-like isoform X2
STRINGXP_010271509.14e-96(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-57MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]