PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016616-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 381aa    MW: 41326 Da    PI: 5.9322
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016616-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.5e-18295329135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    Cs+C++ kTp+WR gp g ktLCnaCG++y++ +l
  NNU_016616-RA 295 CSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 329
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-16289343IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.807289325IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-14291353No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14293327IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.30E-13294351No hitNo description
PfamPF003202.8E-16295329IPR000679Zinc finger, GATA-type
PROSITE patternPS003440295320IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLYQPLPLFF PFNPSSASCC SSVISTPSHI SSLPPSSPQG KSGMECVEAR ALKTSLWPEM  60
GLKPSQQVSC DDDCFVNGSN GLAGDDFFVD GFFDFSNGDL EEGIFEGQLE EKDYASVSSQ  120
EQAENDNSNS SAFSEKDDFG SVPGSELSVP ADDLANLEWL SHFVEDSFSE FSQPYPAGNP  180
TVKPQGESLN RYETEPGTTT VKVPVFLTPI PGKARSKRAR TGGRVWSLAS PRLPESSSTS  240
SSSCSSTSSS STSCFTFLNS GHNLERLCYT GGNPPAKKQK KPGTETGGAQ PPRRCSHCHV  300
QKTPQWRTGP LGAKTLCNAC GVRYKSGRLL PEYRPACSPT FSNDVHSNNH RKVLEMRRKK  360
EMMMMMMSEP ESGLAPAVQS F
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271497.10.0PREDICTED: GATA transcription factor 5
SwissprotQ9FH571e-81GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1U8B6I10.0A0A1U8B6I1_NELNU; GATA transcription factor
STRINGXP_010271497.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-73GATA transcription factor 5