PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016343-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

BBR-BPC

Protein Properties

Length: 284aa MW: 31206.8 Da PI: 10.2256

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016343-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	331.9	1.7e-101	1	284	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnklla 83 mdddg + rn+gyyep+ +lk +lglqlms++aerd+k r++ + + ++++a+++rd m++ ++d++ + +++ll+ NNU_016343-RA 1 MDDDGLNIRNWGYYEPQ-HLKGHLGLQLMSTVAERDTKAffaaRDSAAVMVSPNGAFHPRDcgvseapvhMDY-MKDSWATA-------TRERLLH 87 9**988****9.****************99999999999********999988888888.88888777.......5677888 PP GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179 +++ + + vls+++ +++ q l+++ + e + + + +k++ kkrq ++ +k++kakk+k+ +++k++++ NNU_016343-RA 88 MMPGNP--------NFAVLSEASAAHHPLQ----ILQPPDSS--KDE----RVARMEDSGNKKEGPLKKRQGGRAQKSPKAKKPKR-VPAPKDESN 164 888444........3677888888886655....23332222..223....23333445566777788899999999***99.556767776 PP GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275 ++ +r+ka kks+++v+ngv++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekL +e NNU_016343-RA 165 SAV--PRAKAAKKSTGVVINGVDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTSLSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLVSE 258 666..89************************************************************************************* PP GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301 Gy+lsnp+DL+ +WAkHGtnkfvtir NNU_016343-RA 259 GYNLSNPIDLRPYWAKHGTNKFVTIR 284 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.5E-113	1	284	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.9E-167	1	284	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDDDGLNIRN WGYYEPQHLK GHLGLQLMST VAERDTKAFF AARDSAAVMV SPNGAFHPRD 60 CGVSEAPVHM DYMKDSWATA TRERLLHMMP GNPNFAVLSE ASAAHHPLQI LQPPDSSKDE 120 RVARMEDSGN KKEGPLKKRQ GGRAQKSPKA KKPKRVPAPK DESNSAVPRA KAAKKSTGVV 180 INGVDMDISG IPIPVCSCTG TPQQCYRWGC GGWQSACCTT SLSMYPLPMS TKRRGARIAG 240 RKMSQGAFKK VLEKLVSEGY NLSNPIDLRP YWAKHGTNKF VTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271107.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_010271108.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_010271109.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	3e-95	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A1U8ASZ1	0.0	A0A1U8ASZ1_NELNU; protein BASIC PENTACYSTEINE2-like
STRING	XP_010271107.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	6e-97	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]