PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016252-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 683aa    MW: 77936.4 Da    PI: 5.1505
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016252-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.12.8e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s
  NNU_016252-RA   6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDRKVNS 100
                    79****************************.99**************95334455777************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++vg+kktLv+y+grap+g +tdWvmheyrl
  NNU_016252-RA 101 -QMRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                    .9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-634156IPR003441NAC domain
PROSITE profilePS5100561.6556156IPR003441NAC domain
PfamPF023659.1E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MAPVTLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKTAPG PKFEEQYRAP FYNQYQMMCN  180
DQSSTLEQSS EGRIDDLESS GFPFPSETGS PDTIQGSSFD MNGQRDGSWM QFLAEEAFSS  240
TLPAFPNNGS IPYLPSKVDI ALECARLQHR FTLPPLEVED FPQVDFTDSK FPLTGSFQNN  300
TNGSDILQEI LSVASASQEL VNDSNFQVPW PGNYASVDEF ASIAEIERAG GTQFRQVDAV  360
GSSRSVDKSW GLEPARFIDM DNLEDEFKPG RIVENLRGVG MSNKDLEKQS MLNQHRTVPI  420
EDITNFQQRG AQEEIKGDIN ENNNFDDFND TETNGISLGF INNDPNVIFS QDGDMEDFSD  480
TPTFEVYEKV EVNHGMFVSN RQVADTFFHK IEPSKTIEVH INPVMTHNFY IERENIAVRH  540
HSGSSFFRKF KAFVTDKFKG IKNSVKPSRI SWLMSETMNA VVHMTAFLLT SCIYLGEHSQ  600
NVNLQDQFSS SDKAIMEERE GGCSTPVRKL KKLARVEWSD KKNSIWFANF REGIISNVFL  660
VKNFPFLTIV VALYAFGVHH IMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-55215611168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270697.10.0PREDICTED: NAC domain-containing protein 45
TrEMBLA0A1U8ARY40.0A0A1U8ARY4_NELNU; NAC domain-containing protein 45
STRINGXP_010270697.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-152NAC domain containing protein 28