PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016243-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 779aa    MW: 82642.6 Da    PI: 6.5991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016243-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16487533455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  NNU_016243-RA 487 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 533
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511972.47E-6534No hitNo description
Gene3DG3DSA:2.60.120.3302.5E-7535IPR027443Isopenicillin N synthase-like
Gene3DG3DSA:2.60.120.3302.5E-7150206IPR027443Isopenicillin N synthase-like
CDDcd000832.90E-17479537No hitNo description
SuperFamilySSF474591.83E-20480543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-20487541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13487533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17489538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDISSDGTYG ASAHLDYGMI TLLVTDGVRG LQVKDLISIS ADSYTRNEML QWSHSQEVDV  60
PSECANTIRV HVKVHEKDGR DAVTPKIGRL GTIESVLNDF STAGPSGHMG LAQDEEISPW  120
LNYSLDDSLQ HDYCSELFSE LAGVNVNVLS AQSNSLPIDK NHGCVQMGKD SQIVSAHVGK  180
NSEHGNVSKG VGGGPEVSRT SSSLLCSSSL QQGQTSLPTT RPRVSDFINT NTNNVMDKAS  240
ASCGNSSHSP ISTGGLPNTK IQKQDQGPPK PPLQPGNFTG LMNFSHFSRP AAVVKANLQS  300
LGAVASPGLS SIDKLRSNGK VPAAGSGNPL ESIMIESTSA SRSSTGFHNQ LASMPVKVDT  360
KPSVPKPPKE LLSAEQSEVV CREDGLRKNI SPDQFVGQTS SFAASNAVER PDTEKTMEPM  420
VASSSVCSVN SAGGASNDLK QALKRKSRDA EDSECQSEDV EEESVDARKP APPRVGTGSK  480
RSRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK TLQLQVQIMS  540
MGSGLYMPPV MLPPGMQHVH APHMAHFSPM GVGMGMGMSM GLGFGMGMVD MSGGSSGCPL  600
IQVPPMHGTQ FPTTPISGPA SLPGMAGSGL QMFGLPGQGL PMSMPRAPFI PLSGGSSTIP  660
VLAPDVSGVV TPIKESSPAS PSSSKDPEPT ISLQVMQKNS ADCSEDKMSN QVWQQKKVVN  720
NLRRCKEMIK LGMLIAMKIA DSSKGNGVCN VLNLVTGEAL GSNTLIEELL LIQIYSVQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1491496ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271074.10.0PREDICTED: transcription factor PIF3 isoform X2
TrEMBLA0A1U8B4N60.0A0A1U8B4N6_NELNU; transcription factor PIF3 isoform X2
STRINGXP_010271069.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.29e-54phytochrome interacting factor 3