PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_016212-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11780.3 Da PI: 4.0052 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 11 | 54 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ eE +l+ a ++ + +W+ +a+++g g+++++++ +++ NNU_016212-RA 11 WSWEENKLFEVALAMVDEEnpnRWEVVAAMVG-GKSAEEVRKHYF 54 **************999989999*********.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1E-5 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.14E-11 | 11 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-6 | 11 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 11 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.156 | 11 | 57 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MGDVSGVFFG WSWEENKLFE VALAMVDEEN PNRWEVVAAM VGGKSAEEVR KHYFILLKDL 60 ECIESGRFDH GFEDQLCLQV ECTQSICWTD EDQKMLLQLD TN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-16 | 1 | 67 | 1 | 67 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270991.1 | 1e-70 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 5e-21 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A1U8B5B5 | 2e-69 | A0A1U8B5B5_NELNU; protein RADIALIS-like 3 | ||||
STRING | XP_010270991.1 | 4e-70 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-19 | RAD-like 6 |