PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016173-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

CAMTA

Protein Properties

Length: 1064aa MW: 118788 Da PI: 6.4889

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016173-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	138.9	1.5e-43	9	90	37	118
CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gsl+L++rk +ryfrkDG++w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n++fqrr+yw+L+ +le+ivlvhy+evk NNU_016173-RA 9 GSLFLFDRKALRYFRKDGHNWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDGQLEHIVLVHYREVK 90 9******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	8.0E-48	1	90	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	63.799	1	95	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.7E-37	9	88	IPR005559	CG-1 DNA-binding domain
CDD	cd00102	5.60E-4	490	578	No hit	No description
Gene3D	G3DSA:2.60.40.10	1.5E-6	490	580	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	5.74E-18	491	577	IPR014756	Immunoglobulin E-set
Pfam	PF01833	5.4E-7	491	576	IPR002909	IPT domain
CDD	cd00204	1.39E-13	675	784	No hit	No description
SuperFamily	SSF48403	3.67E-15	676	787	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-15	686	787	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.547	692	786	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.038	725	754	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.232	725	757	IPR002110	Ankyrin repeat
SMART	SM00248	370	764	793	IPR002110	Ankyrin repeat
SMART	SM00015	160	846	870	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.1E-7	896	951	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.12	900	922	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.048	901	930	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0016	902	921	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.1E-4	923	945	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.743	924	952	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.8E-5	927	945	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.87	1005	1033	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MLFVFILGGS LFLFDRKALR YFRKDGHNWR KKKDGKTVRE AHEKLKAGSV DVLHCYYAHG 60 EDNENFQRRS YWMLDGQLEH IVLVHYREVK EKEKFEGWVQ CGEDDGEPED LSVDGSSVGN 120 VNDEGSCAGG DMEGWNIARL FQVEDCNRII SXPRPQSAQG LSDGENRENR KQSRNMLFRG 180 DPGVEWKDHQ GNRSGISRLL SADQTQTENA QISSAPSTAQ TTSPVITVQA SYASSPSTAD 240 WSGQTPSSEF EDVESGDDLG TSTLSETIPC STFQNVSAHD TSGFSELSSN YPCYAGASFG 300 HDASPSMWPD IHNSSRNFTS MHGQKIYFDQ SNGADIITQK LIDAKLDPYS MARDSLFPDG 360 HIQIGEVPRI SQVEQGNDLQ LLHPQFQSNS GSHIMVAGNN QFLAFQNDAP AVGPYNEELG 420 ELKKLDSFGR WMNKEIGGDC DDSLMASDSG NYWNTLDTQN GDKEVSSFSR HIQLDIDSLG 480 PFLSQEQLFS IHDFSPDWAY SGIETKVLIS GTFLSDAKHF TSTKWCCMFG DVEVSAEVLT 540 DNVLRCQAPP HAPGRVPFYI TCSNRLACSE VREFEYREKP LDVSVAIRSD PEDEMRLQIR 600 FAKMLYLGLE RKWLDCSVDN CDKCRLKKDI YSMRTDDEKE WGQIEKASLS FDGNHENPRD 660 VLIQKLLKDR LYEWLVCKVH EGGKGPHILD DDGQGVIHLA AALGYEWAMG PIVAAGVSPS 720 FRDAHGRTGL HWAAYFGREE AVVKLVRLGA APGAVDDPTP KYPGGRTAAD LASSRGHKGI 780 AGYLAEADLT SHLSLLTLRE SVMDSVAATI AAEKAIETAK EQSVVPLDGS REEQCSLKGS 840 LAAVRKSAQA AALIQAAFRA RSFKQRQLTK SNENSEIPTD LVALSSLKNK PQKIGHYSDY 900 LHSAAVKIQQ KYRGWKGRKE YLKIRNRIVK IQAHVRGHQV RKQYKKVIWS VSIVEKAILR 960 WRRKGTGLRG FRAEKAIGNV ETDLGKSDEY EFLRLGRKQK VAGVEKALAR VQSMVRYPEA 1020 RDQYMRLVTK SQNLEMRDKG SSTSNQVQTS EKSTNEDLLA HMTD

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MLFVFILGGS LFLFDRKALR YFRKDGHNWR KKKDGKTVRE AHEKLKAGSV DVLHCYYAHG  60
EDNENFQRRS YWMLDGQLEH IVLVHYREVK EKEKFEGWVQ CGEDDGEPED LSVDGSSVGN  120
VNDEGSCAGG DMEGWNIARL FQVEDCNRII SXPRPQSAQG LSDGENRENR KQSRNMLFRG  180
DPGVEWKDHQ GNRSGISRLL SADQTQTENA QISSAPSTAQ TTSPVITVQA SYASSPSTAD  240
WSGQTPSSEF EDVESGDDLG TSTLSETIPC STFQNVSAHD TSGFSELSSN YPCYAGASFG  300
HDASPSMWPD IHNSSRNFTS MHGQKIYFDQ SNGADIITQK LIDAKLDPYS MARDSLFPDG  360
HIQIGEVPRI SQVEQGNDLQ LLHPQFQSNS GSHIMVAGNN QFLAFQNDAP AVGPYNEELG  420
ELKKLDSFGR WMNKEIGGDC DDSLMASDSG NYWNTLDTQN GDKEVSSFSR HIQLDIDSLG  480
PFLSQEQLFS IHDFSPDWAY SGIETKVLIS GTFLSDAKHF TSTKWCCMFG DVEVSAEVLT  540
DNVLRCQAPP HAPGRVPFYI TCSNRLACSE VREFEYREKP LDVSVAIRSD PEDEMRLQIR  600
FAKMLYLGLE RKWLDCSVDN CDKCRLKKDI YSMRTDDEKE WGQIEKASLS FDGNHENPRD  660
VLIQKLLKDR LYEWLVCKVH EGGKGPHILD DDGQGVIHLA AALGYEWAMG PIVAAGVSPS  720
FRDAHGRTGL HWAAYFGREE AVVKLVRLGA APGAVDDPTP KYPGGRTAAD LASSRGHKGI  780
AGYLAEADLT SHLSLLTLRE SVMDSVAATI AAEKAIETAK EQSVVPLDGS REEQCSLKGS  840
LAAVRKSAQA AALIQAAFRA RSFKQRQLTK SNENSEIPTD LVALSSLKNK PQKIGHYSDY  900
LHSAAVKIQQ KYRGWKGRKE YLKIRNRIVK IQAHVRGHQV RKQYKKVIWS VSIVEKAILR  960
WRRKGTGLRG FRAEKAIGNV ETDLGKSDEY EFLRLGRKQK VAGVEKALAR VQSMVRYPEA  1020
RDQYMRLVTK SQNLEMRDKG SSTSNQVQTS EKSTNEDLLA HMTD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270931.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X2
Swissprot	Q6NPP4	1e-169	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1U8B566	0.0	A0A1U8B566_NELNU; calmodulin-binding transcription activator 2-like isoform X2
STRING	XP_010270930.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	1e-163	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]