PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016053-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 1030aa MW: 113422 Da PI: 8.6827

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016053-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+ dls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ NNU_016053-RA 157 MCQVDDCKGDLSNAKDYHRRHKVCELHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 234 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.9E-34	152	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.718	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.49E-37	156	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-29	158	231	IPR004333	Transcription factor, SBP-box
CDD	cd00204	1.47E-4	819	925	No hit	No description
SuperFamily	SSF48403	1.9E-6	819	917	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.4E-5	819	913	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MDDVGAQLAS PLFIHQALSG RFCEAPSMAK KRDLPWQSPN FQHQHQQQQH QRFNSGFQNS 60 KGNWNPNSWD WDSMMFVAKP SETEVLRVGT AAVVESEQKK KGEETLKSLV VNKGSVDEDG 120 ENLTLKLGGS LYSVDESAAR PNKRVRSGSP GTGSYPMCQV DDCKGDLSNA KDYHRRHKVC 180 ELHSKTTKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDVSSR 240 LLVPGNLENS GSGNLDVVNL LTILSRLQGN IVDKSANGPS TPDRERLIQI LNKINALPFS 300 GNSASRLPVP CSFDLNVSQE ASSDSLNKTN GNTPVPSTTD LLAALSAALA AATPDAIALL 360 SQRNSKSCDD DKSKLNSLDQ AGGFHLQKKP ISGCPSIGGE RSNSTSQSPV ETPDCQVHIS 420 RPNLPFQLFS SSPEGGSLPK LGSSRRYFSS DSSNPLEERS PSSSPIVQKL FPLHSEAEIL 480 KHERMSMSGE DNATIETSTT RGWTSPLELS KGPNGRLESG SAQNLQYQGG YTSSSGSDHS 540 PSSSNSDAQD RTGRIIFKLF DKDPSNLPGT LRTQILNWLS HSPSEMESYI RPGCVVLSLV 600 SHKDGKIRLC KSWRTWSAPE LISVSPLAVV GGEETSLVLK GRNLTAPGTK VHCTYLGGYK 660 TKEVPGSIYQ VAMHDNTSLE MKFPGVENGF KGNSFPVIIA NATICQELRV LESEFDQDSK 720 MASVVTEDWI QDFRRPQSRE DILHFLNELG WLFQRKKNPS KPDSANFSHS RFKFLFTFSV 780 ERDWCAVVKT LLDILLEKST GTDGPSKASV EMLSDIQLLS RAVKRRCKKM VDLLVHYYVT 840 ANGGSTKQYL FPPNLVGSGG VTPLHLAACM QGLEDIVDSL TNDPQQIGLN CWNSLPDANG 900 QTPFAYSSMR NNHSYNRMVA RKLADRKRGQ VSISVGDDIS LHQSRMMAEQ TNKLLPETSQ 960 GWQSCAKCTV VATRSYKRMP GSKGLLHRPY VHSMLAIAAV CVCVCLFLRG SPDIGSVAPF 1020 KWENLDYGWS

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MDDVGAQLAS PLFIHQALSG RFCEAPSMAK KRDLPWQSPN FQHQHQQQQH QRFNSGFQNS  60
KGNWNPNSWD WDSMMFVAKP SETEVLRVGT AAVVESEQKK KGEETLKSLV VNKGSVDEDG  120
ENLTLKLGGS LYSVDESAAR PNKRVRSGSP GTGSYPMCQV DDCKGDLSNA KDYHRRHKVC  180
ELHSKTTKAL VGKQMQRFCQ QCSRFHPLSE FDEGKRSCRR RLAGHNRRRR KTQPEDVSSR  240
LLVPGNLENS GSGNLDVVNL LTILSRLQGN IVDKSANGPS TPDRERLIQI LNKINALPFS  300
GNSASRLPVP CSFDLNVSQE ASSDSLNKTN GNTPVPSTTD LLAALSAALA AATPDAIALL  360
SQRNSKSCDD DKSKLNSLDQ AGGFHLQKKP ISGCPSIGGE RSNSTSQSPV ETPDCQVHIS  420
RPNLPFQLFS SSPEGGSLPK LGSSRRYFSS DSSNPLEERS PSSSPIVQKL FPLHSEAEIL  480
KHERMSMSGE DNATIETSTT RGWTSPLELS KGPNGRLESG SAQNLQYQGG YTSSSGSDHS  540
PSSSNSDAQD RTGRIIFKLF DKDPSNLPGT LRTQILNWLS HSPSEMESYI RPGCVVLSLV  600
SHKDGKIRLC KSWRTWSAPE LISVSPLAVV GGEETSLVLK GRNLTAPGTK VHCTYLGGYK  660
TKEVPGSIYQ VAMHDNTSLE MKFPGVENGF KGNSFPVIIA NATICQELRV LESEFDQDSK  720
MASVVTEDWI QDFRRPQSRE DILHFLNELG WLFQRKKNPS KPDSANFSHS RFKFLFTFSV  780
ERDWCAVVKT LLDILLEKST GTDGPSKASV EMLSDIQLLS RAVKRRCKKM VDLLVHYYVT  840
ANGGSTKQYL FPPNLVGSGG VTPLHLAACM QGLEDIVDSL TNDPQQIGLN CWNSLPDANG  900
QTPFAYSSMR NNHSYNRMVA RKLADRKRGQ VSISVGDDIS LHQSRMMAEQ TNKLLPETSQ  960
GWQSCAKCTV VATRSYKRMP GSKGLLHRPY VHSMLAIAAV CVCVCLFLRG SPDIGSVAPF  1020
KWENLDYGWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-31	148	231	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	820	825	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270607.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1U8AS54	0.0	A0A1U8AS54_NELNU; squamosa promoter-binding-like protein 14
STRING	XP_010270607.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]