PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_016007-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 42438.1 Da PI: 6.8324 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.4e-54 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+++yL+ kv + +++ i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ev+s+ NNU_016007-RA 21 LPPGFRFHPTDEELITFYLASKVFKGSFSG-VDIAEVDLNRCEPWELPDIAKMGEREWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREVYSAs 115 79*************************999.44***************8788899**************************************997 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfykgrap+gekt+Wvmheyrl NNU_016007-RA 116 NGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-63 | 16 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.927 | 21 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-28 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MLAMEEILCE VHGEDTNEQG LPPGFRFHPT DEELITFYLA SKVFKGSFSG VDIAEVDLNR 60 CEPWELPDIA KMGEREWYFF SLRDRKYPTG LRTNRATEAG YWKATGKDRE VYSASNGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFAYRHTCKE EWVICRIFHK TGGEKKSPFF 180 QAAHGYLMEA CSSSPSTCLP PLLEPPTTVM DVQSSIQSLQ NNYLIHQENG VKNLINPVST 240 QTQLFPMSSS SLLRPSFSPT TINPNNPSHS ILLKSLLSHQ DCTLKQATVQ KQCKTESNFS 300 HFQPLDANLH WVDKIHQNPL FIEMGVGGPG GGGGGGGPGP GGGVLGFTAV ADTVHEMSTS 360 VAFNRAGFQM MLDPPIRGAG ESGP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 21 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 21 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 21 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 21 | 176 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-50 | 21 | 176 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-50 | 21 | 176 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 21 | 176 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270533.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-108 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A1U8B3C6 | 0.0 | A0A1U8B3C6_NELNU; protein CUP-SHAPED COTYLEDON 3-like | ||||
STRING | XP_010270533.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-106 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|