PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016007-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 384aa    MW: 42438.1 Da    PI: 6.8324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016007-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.4e-54211481128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+++yL+ kv + +++    i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ev+s+ 
  NNU_016007-RA  21 LPPGFRFHPTDEELITFYLASKVFKGSFSG-VDIAEVDLNRCEPWELPDIAKMGEREWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREVYSAs 115
                    79*************************999.44***************8788899**************************************997 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  NNU_016007-RA 116 NGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148
                    8899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-6316170IPR003441NAC domain
PROSITE profilePS5100559.92721170IPR003441NAC domain
PfamPF023659.2E-2822148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLAMEEILCE VHGEDTNEQG LPPGFRFHPT DEELITFYLA SKVFKGSFSG VDIAEVDLNR  60
CEPWELPDIA KMGEREWYFF SLRDRKYPTG LRTNRATEAG YWKATGKDRE VYSASNGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFAYRHTCKE EWVICRIFHK TGGEKKSPFF  180
QAAHGYLMEA CSSSPSTCLP PLLEPPTTVM DVQSSIQSLQ NNYLIHQENG VKNLINPVST  240
QTQLFPMSSS SLLRPSFSPT TINPNNPSHS ILLKSLLSHQ DCTLKQATVQ KQCKTESNFS  300
HFQPLDANLH WVDKIHQNPL FIEMGVGGPG GGGGGGGPGP GGGVLGFTAV ADTVHEMSTS  360
VAFNRAGFQM MLDPPIRGAG ESGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-502117617171NO APICAL MERISTEM PROTEIN
1ut4_B4e-502117617171NO APICAL MERISTEM PROTEIN
1ut7_A4e-502117617171NO APICAL MERISTEM PROTEIN
1ut7_B4e-502117617171NO APICAL MERISTEM PROTEIN
3swm_A5e-502117620174NAC domain-containing protein 19
3swm_B5e-502117620174NAC domain-containing protein 19
3swm_C5e-502117620174NAC domain-containing protein 19
3swm_D5e-502117620174NAC domain-containing protein 19
3swp_A5e-502117620174NAC domain-containing protein 19
3swp_B5e-502117620174NAC domain-containing protein 19
3swp_C5e-502117620174NAC domain-containing protein 19
3swp_D5e-502117620174NAC domain-containing protein 19
4dul_A4e-502117617171NAC domain-containing protein 19
4dul_B4e-502117617171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270533.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-108NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A1U8B3C60.0A0A1U8B3C6_NELNU; protein CUP-SHAPED COTYLEDON 3-like
STRINGXP_010270533.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-106NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]