PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015953-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 476aa    MW: 54622.9 Da    PI: 6.3408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015953-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.3e-141199197
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                   ffk+l       ++ l +p+kf+++ +     s   +l+ ++++ W++ l  rk++++ +++++GW+eFv+   L eg +++Fk++g+s f  +v ++
  NNU_015953-RA 11 FFKIL--IGEEFTHKLGIPRKFIRKVED---LSDVAVLMVPDNNIWDIGL--RKTDDGrVWFQNGWQEFVEYYSLHEGQILLFKYEGDSYF--YVDIL 99
                   66777..44555667********99953...455799999**********..6665555***************************99888..77765 PP
2B350.63.4e-16364457198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    f  ++ ps+v k   l +p + + ++  +kke    ++l+ ++gr W  ++    ++g+++++kGW +F+ +n+L+egD +vF+l++++  e+ ++
  NNU_015953-RA 364 FMVIMRPSYVYKGFVLKVPSSIIMKFlTMKKE---NVILRVSDGRMWPARC--ILRQGMTWISKGWADFALDNNLEEGDCCVFELTKTNVIEMQIS 454
                    778899****************9999644443...5***************..66677899************************99999999999 PP

                    EE- CS
             B3  96 vfr 98 
                    +fr
  NNU_015953-RA 455 IFR 457
                    997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-196100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-187100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.429102IPR003340B3 DNA binding domain
CDDcd100174.66E-18999No hitNo description
SMARTSM010191.9E-1111102IPR003340B3 DNA binding domain
PfamPF023621.2E-111198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-24355457IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-24357457IPR015300DNA-binding pseudobarrel domain
CDDcd100175.68E-21362457No hitNo description
SMARTSM010191.3E-11364459IPR003340B3 DNA binding domain
PfamPF023626.2E-15364457IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014364459IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGGKRAESPS FFKILIGEEF THKLGIPRKF IRKVEDLSDV AVLMVPDNNI WDIGLRKTDD  60
GRVWFQNGWQ EFVEYYSLHE GQILLFKYEG DSYFYVDILG TFEIQYPSGS RHCEEPNLGR  120
RRSTHREEDV EGEDMEVLED SPPCKSDTNS RKVCAQRTEA KVTERSMTKP SNISVNKNEE  180
NEDHRVLKGS AKGEESNQVK QKKPEELAFD LDNEIGLVPI HSGSQYSNPS ISSPYGSSSD  240
RIHWNSQLSP NNAVSVQLSL SFSSQDVDLQ FGLSKQTDDK AEQYCSNPGY GSMEFSAMAK  300
IAQKSRRTEP YGQNPLTENE QRLGFPVMKT YSRLLMSRRR PVTNEERERA VQAAKMFQSE  360
NPFFMVIMRP SYVYKGFVLK VPSSIIMKFL TMKKENVILR VSDGRMWPAR CILRQGMTWI  420
SKGWADFALD NNLEEGDCCV FELTKTNVIE MQISIFRVLE DVVPPIRLAK HFFQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-3233746222146B3 domain-containing transcription factor VRN1
4i1k_B2e-3233746222146B3 domain-containing transcription factor VRN1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270408.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1U8ARQ50.0A0A1U8ARQ5_NELNU; B3 domain-containing transcription factor VRN1-like
STRINGXP_010270408.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-34related to vernalization1 1