PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_015908-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 22137.9 Da PI: 4.7939 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.4 | 2.4e-39 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L +k++ +++ +vi+++d+y ++Pw+L k++++ +++wyfFs+r +nr+ ++gyWk g d+++++ NNU_015908-RA 8 LPPGFRFYPTDEELVVHFLYRKAALLPCHP-DVIPDLDLYPYDPWELSgKALEGINNHWYFFSRR--------TPNRISANGYWKPLGVDEPIFTG 94 79*************************999.99**************9667777888******98........4699999**************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ap+g kt+Wvm+eyrl NNU_015908-RA 95 ESKKVGMKKYLVFYLGEAPTGIKTNWVMQEYRL 127 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-48 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.594 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-24 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGDGNVNLPP GFRFYPTDEE LVVHFLYRKA ALLPCHPDVI PDLDLYPYDP WELSGKALEG 60 INNHWYFFSR RTPNRISANG YWKPLGVDEP IFTGESKKVG MKKYLVFYLG EAPTGIKTNW 120 VMQEYRLSDS GSSSRSSRKK GNSKMDSSRL VLCRVYERSG GSQGSFCDED GDGTELSCLD 180 EVFLSLDDLD EISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-47 | 5 | 163 | 17 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270354.1 | 1e-144 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 5e-77 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1U8B3S0 | 1e-142 | A0A1U8B3S0_NELNU; NAC domain-containing protein 104-like | ||||
STRING | XP_010270354.1 | 1e-143 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-76 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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