PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015672-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 372aa    MW: 41844.2 Da    PI: 5.144
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015672-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-5361331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yLk+k+eg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nr+t sgyWkatgkd++v++
  NNU_015672-RA   6 LPPGFRFHPTDEELVGYYLKRKIEGLEFEL-EVIPVIDLYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRVTVSGYWKATGKDRKVVC 100
                    79****************************.99**************96434556788************************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++gl+ktLvfy+grap g +tdWvmheyrl
  NNU_015672-RA 101 -QSAVTGLRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-603157IPR003441NAC domain
PROSITE profilePS5100558.1626157IPR003441NAC domain
PfamPF023659.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGGTSLPPGF RFHPTDEELV GYYLKRKIEG LEFELEVIPV IDLYKFDPWE LPDKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRVTVSGYWK ATGKDRKVVC QSAVTGLRKT LVFYRGRAPL  120
GDRTDWVMHE YRLSDDPSHQ GTFSFQGGFA LCRVVKKNDQ GLKNKGDLQG EPRGKKVGET  180
SVTGKITPTR LLNGLLSNTS SSNPVMSPCE IPTMKEFSSE NLNKINPMNI WISPDLILDS  240
SKDYQQAQVV ADFFPHTDLQ GSISPCHQSG SAGISPTSLY SNFIEEVEPI EDFGGISCLS  300
SYTEPTKYMG LYGDEEMTYQ SFEQTNLLSP YPLINGLEAW NPAPICRQSS GDGSLWDPSS  360
LWLHEDNLAI VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-54516316171NO APICAL MERISTEM PROTEIN
1ut4_B1e-54516316171NO APICAL MERISTEM PROTEIN
1ut7_A1e-54516316171NO APICAL MERISTEM PROTEIN
1ut7_B1e-54516316171NO APICAL MERISTEM PROTEIN
3swm_A1e-54516319174NAC domain-containing protein 19
3swm_B1e-54516319174NAC domain-containing protein 19
3swm_C1e-54516319174NAC domain-containing protein 19
3swm_D1e-54516319174NAC domain-containing protein 19
3swp_A1e-54516319174NAC domain-containing protein 19
3swp_B1e-54516319174NAC domain-containing protein 19
3swp_C1e-54516319174NAC domain-containing protein 19
3swp_D1e-54516319174NAC domain-containing protein 19
4dul_A1e-54516316171NAC domain-containing protein 19
4dul_B1e-54516316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269977.10.0PREDICTED: NAC domain-containing protein 19-like
RefseqXP_019054829.10.0PREDICTED: NAC domain-containing protein 19-like
SwissprotO496971e-94NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1U8Q7R10.0A0A1U8Q7R1_NELNU; NAC domain-containing protein 19-like
STRINGXP_010269977.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.14e-97NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]