PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015354-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 490aa MW: 53362.7 Da PI: 9.2157

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015354-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H NNU_015354-RA 6 FVCEICSKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.2	0.00057	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ NNU_015354-RA 82 WKCDKCSKKYAVQSDWKAHSKTC 104 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.0E-6	5	28	No hit	No description
PROSITE profile	PS50157	10.887	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-4	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.0E-6	77	102	No hit	No description
SMART	SM00355	150	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTST EVRKRVYICP EPSCVHHNPG 60 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTIFSSS 120 NVSSTPCRRD SFITHRAFCD ALTEENNKVN QQQGLASTTE EAKSQGQVTQ LMSSMPINTI 180 NNSLVGISSE FNQPGDKNPL KSLPSGSDIM SSMPPKSLNM AAGSMFSSSS ATLFGAPRST 240 PSSSFCFLGS SAHMSATALL QKAALIGAAA GSNTNSSMIH KSFIAGLVGT DHQLSSIRTS 300 SYGGMHQNNN SSYDHTQLQA DPSQPVGKDS GELTNQLLEK SKQDKSPKFF EATESARSSG 360 MNGMGMLLGV VDQNHGFLKN IEHEHSSSTS TCSMSQGRSS VNSGVGIPPT RRNQIEMYRV 420 GGSSSGDVMT VDFLGIGGSK SAALHEQGQQ QQKQGSELEA ISEQRLQGFH QFQQQQSHGQ 480 TTMVKSLWDV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTST EVRKRVYICP EPSCVHHNPG  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYK CDCGTIFSSS  120
NVSSTPCRRD SFITHRAFCD ALTEENNKVN QQQGLASTTE EAKSQGQVTQ LMSSMPINTI  180
NNSLVGISSE FNQPGDKNPL KSLPSGSDIM SSMPPKSLNM AAGSMFSSSS ATLFGAPRST  240
PSSSFCFLGS SAHMSATALL QKAALIGAAA GSNTNSSMIH KSFIAGLVGT DHQLSSIRTS  300
SYGGMHQNNN SSYDHTQLQA DPSQPVGKDS GELTNQLLEK SKQDKSPKFF EATESARSSG  360
MNGMGMLLGV VDQNHGFLKN IEHEHSSSTS TCSMSQGRSS VNSGVGIPPT RRNQIEMYRV  420
GGSSSGDVMT VDFLGIGGSK SAALHEQGQQ QQKQGSELEA ISEQRLQGFH QFQQQQSHGQ  480
TTMVKSLWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-32	78	149	3	65	Zinc finger protein JACKDAW
5b3h_F	3e-32	78	149	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB116545	2e-42	AB116545.1 Malus x domestica MdZF1 mRNA for zinc finger protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269454.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	2e-91	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8B0S7	0.0	A0A1U8B0S7_NELNU; protein indeterminate-domain 2-like
STRING	XP_010269454.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	7e-83	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]