PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_015121-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29055.6 Da PI: 4.7657 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l d++k++G +W+ +r g++R++k+c++rw +yl NNU_015121-RA 14 KGAWTPDEDEKLTDYIKKYGHWNWRELPRFAGLKRCGKSCRLRWVNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++ Edel+ ++++ lG++ W++Ia++++ gRt++++k++w++ NNU_015121-RA 67 RGLFSEGEDELIMNLHESLGNK-WAAIAAKLP-GRTDNEVKNHWHTN 111 67899*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-22 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.078 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.17E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.944 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.51E-9 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVKTGYCEKT GLKKGAWTPD EDEKLTDYIK KYGHWNWREL PRFAGLKRCG KSCRLRWVNY 60 LRPNIRRGLF SEGEDELIMN LHESLGNKWA AIAAKLPGRT DNEVKNHWHT NLKKRLKQMS 120 ENNLHSHEIS ECKAGVNDMK ELEPDAPFSY VPMDEIGSSP SSSQLPSSDS AAVNGTHWFE 180 DDNIALPETC PEAYYNFWTE PFLAGNSYID EIFFETSVES DLVPPLSLLP PVDPLCVLDF 240 YSDDNMDLFN QLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKRLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268905.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9SBF3 | 2e-53 | MYB92_ARATH; Transcription factor MYB92 | ||||
Swissprot | Q9SJX8 | 3e-54 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A1U8AN20 | 0.0 | A0A1U8AN20_NELNU; myb-related protein Myb4-like | ||||
STRING | XP_010268905.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-56 | myb domain protein 14 |
Publications ? help Back to Top | |||
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