PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_015103-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 386aa MW: 43734 Da PI: 6.4308 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.4 | 4.4e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g++R++k+c++rw++yl NNU_015103-RA 14 KGPWTPEEDKKLIDYIQKHGHGSWRTLPKNAGLHRCGKSCRLRWNNYL 61 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 8.8e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w++ NNU_015103-RA 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNT 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.106 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.20E-13 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.729 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-11 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MGRAPCCEKN GLKKGPWTPE EDKKLIDYIQ KHGHGSWRTL PKNAGLHRCG KSCRLRWNNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT RIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILN SPLYNPSQLD LSRLLGIQPL VNPELLRLAT TLLSSQNENR 180 PEFLLQNLHE NQLCNPQLPN DQFASFPPNQ LPTNPIQEIP VCTTSTTPWA PFLDETQLLQ 240 TNVEKFPSNP TSFSCPTSQT NLWQHNEMPC NFQESFVSLP NFSYVGSDHP TADHTLLNNS 300 IFQSNNNSSS SSSHDFGFTS VLSTPSSSTA PLNSSSTNIN SSTEDERDSY CSNVLKFEIP 360 DLLDVNEFML QYQETGAPCF DGKLHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268879.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9LDR8 | 1e-113 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1U8ARB3 | 0.0 | A0A1U8ARB3_NELNU; transcription factor MYB39 | ||||
STRING | XP_010268879.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 4e-93 | MYB-like 102 |
Publications ? help Back to Top | |||
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