PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_015017-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 39019.5 Da PI: 9.1001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.6 | 6e-54 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ NNU_015017-RA 16 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-TIIAEVDLYKFDPWELPGKATFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSg 110 79****************************.89***************888899***************************************997 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy gr pkg kt+W+mheyrl NNU_015017-RA 111 GTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 143 7788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-65 | 8 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.555 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MESTDSSSGS QQQPQLPPGF RFHPTDEELV VHYLKKKASS APLPVTIIAE VDLYKFDPWE 60 LPGKATFGDQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSG GTQKVGVKKA 120 LVFYGGRPPK GIKTNWIMHE YRLADNNNTT SNKPPGADTS NKKSSLRLDD WVLCRIYKKN 180 NSNRPMERDK EDSMDDMLGL PTSTSFMEVQ QSSKQPTQRT ATYGSLLETD ENFFEGLLTD 240 DGVNSTSITQ LGSASSKTEL SMVPAASLPP LKRTLPSPYW NDVSAVGPSS AKRFHANNHN 300 NSGSDTTNAN SPITTLLLNQ LPQATPFHSP LLGPMGDGVF RQPYQFSGMN WNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-74 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-74 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-74 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-74 | 13 | 182 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 3e-74 | 13 | 182 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-74 | 13 | 182 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-74 | 13 | 182 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268761.1 | 0.0 | PREDICTED: NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-113 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A1U8AZX0 | 0.0 | A0A1U8AZX0_NELNU; NAC transcription factor 56-like | ||||
STRING | XP_010268761.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-113 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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