PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015017-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 353aa    MW: 39019.5 Da    PI: 9.1001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015017-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.66e-54161431128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ 
  NNU_015017-RA  16 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-TIIAEVDLYKFDPWELPGKATFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSg 110
                    79****************************.89***************888899***************************************997 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  NNU_015017-RA 111 GTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 143
                    7788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-658179IPR003441NAC domain
PROSITE profilePS5100562.55516179IPR003441NAC domain
PfamPF023653.8E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MESTDSSSGS QQQPQLPPGF RFHPTDEELV VHYLKKKASS APLPVTIIAE VDLYKFDPWE  60
LPGKATFGDQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTSG GTQKVGVKKA  120
LVFYGGRPPK GIKTNWIMHE YRLADNNNTT SNKPPGADTS NKKSSLRLDD WVLCRIYKKN  180
NSNRPMERDK EDSMDDMLGL PTSTSFMEVQ QSSKQPTQRT ATYGSLLETD ENFFEGLLTD  240
DGVNSTSITQ LGSASSKTEL SMVPAASLPP LKRTLPSPYW NDVSAVGPSS AKRFHANNHN  300
NSGSDTTNAN SPITTLLLNQ LPQATPFHSP LLGPMGDGVF RQPYQFSGMN WNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-741318214168NO APICAL MERISTEM PROTEIN
1ut4_B3e-741318214168NO APICAL MERISTEM PROTEIN
1ut7_A3e-741318214168NO APICAL MERISTEM PROTEIN
1ut7_B3e-741318214168NO APICAL MERISTEM PROTEIN
3swm_A3e-741318217171NAC domain-containing protein 19
3swm_B3e-741318217171NAC domain-containing protein 19
3swm_C3e-741318217171NAC domain-containing protein 19
3swm_D3e-741318217171NAC domain-containing protein 19
3swp_A3e-741318217171NAC domain-containing protein 19
3swp_B3e-741318217171NAC domain-containing protein 19
3swp_C3e-741318217171NAC domain-containing protein 19
3swp_D3e-741318217171NAC domain-containing protein 19
4dul_A3e-741318214168NAC domain-containing protein 19
4dul_B3e-741318214168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268761.10.0PREDICTED: NAC transcription factor 56-like
SwissprotQ9LD441e-113NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A1U8AZX00.0A0A1U8AZX0_NELNU; NAC transcription factor 56-like
STRINGXP_010268761.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-113NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]