PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015012-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 348aa MW: 39490.3 Da PI: 7.7284

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015012-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ + NNU_015012-RA 14 LPPGFRFYPTDEELLVHYLCRKVAGHHFSL-DIIGEIDLYKFDPWFLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-E 107 79*************************9.99***********988899********************************9999.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g++vg+kk Lvfy g+apkg+kt+W+mheyrl NNU_015012-RA 108 GRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-66	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	14	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVMSERDPTS QLALPPGFRF YPTDEELLVH YLCRKVAGHH FSLDIIGEID LYKFDPWFLP 60 SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS EPQRKNGSSR LDDWVLCRIY KKHSSAEKSV PGTWNKEQSH 180 ASSSSSSSHL DDVLESLPEI DDQFFNLPRM NSLRNLQLPV PDDKSNVQNI GAGKFDWVSS 240 GMMGSLSQLV SSNPTQRPET EVYVPTMPPL LQVDSPSEKF GGSSIEEEVE SGLRSQRVDN 300 SSLLQQQQHQ QHHHPSSNLF AQQLPDPIDP FGFRYSLQPT SGCFGYRQ

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVMSERDPTS QLALPPGFRF YPTDEELLVH YLCRKVAGHH FSLDIIGEID LYKFDPWFLP  60
SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLS EPQRKNGSSR LDDWVLCRIY KKHSSAEKSV PGTWNKEQSH  180
ASSSSSSSHL DDVLESLPEI DDQFFNLPRM NSLRNLQLPV PDDKSNVQNI GAGKFDWVSS  240
GMMGSLSQLV SSNPTQRPET EVYVPTMPPL LQVDSPSEKF GGSSIEEEVE SGLRSQRVDN  300
SSLLQQQQHQ QHHHPSSNLF AQQLPDPIDP FGFRYSLQPT SGCFGYRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-105	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-105	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-105	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-105	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-105	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-105	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-105	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-105	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-105	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-105	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-105	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-105	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-105	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-105	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268760.1	0.0	PREDICTED: NAC domain-containing protein 72-like
Swissprot	A0A3Q7HH64	1e-136	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A1U8AZ45	0.0	A0A1U8AZ45_NELNU; NAC domain-containing protein 72-like
STRING	XP_010268760.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-119	NAC family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]