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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_014961-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | GATA | ||||||||
| Protein Properties | Length: 259aa MW: 29306.9 Da PI: 8.1336 | ||||||||
| Description | GATA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GATA | 51.4 | 1.5e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cgt++TplWR+gp ++ LCnaCG +yr kg+
NNU_014961-RA 7 CYHCGTKNTPLWRNGPPEKPILCNACGSRYRIKGT 41
****************66666**********9997 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00401 | 7.4E-11 | 1 | 59 | IPR000679 | Zinc finger, GATA-type |
| SuperFamily | SSF57716 | 1.52E-12 | 5 | 51 | No hit | No description |
| CDD | cd00202 | 5.45E-15 | 6 | 41 | No hit | No description |
| PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
| Pfam | PF00320 | 2.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
| PROSITE profile | PS50114 | 11.648 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
| Gene3D | G3DSA:3.30.50.10 | 5.3E-13 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 259 aa Download sequence Send to blast |
MGKQGPCYHC GTKNTPLWRN GPPEKPILCN ACGSRYRIKG TLENYYPLHR PFSIFDSTNS 60 KTSEKNKSKA TKGLHIKVKN DTTMEGEEAF TRDSMCSTKF EDDIDDTSNR SSSESAILCS 120 ESCIHLESMD KKEISGSGQP SFWDQQIPSR KRSKIRRSST SLIEILRRDL IYTKQEKELC 180 YLSESSEDLL IYKREDARFS NEIGLGTVLL NHRPLSFKEE YESSSIVMKN MVSSLNDTNM 240 SPSSSSSSSS SCLYYTISK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019054727.1 | 1e-121 | PREDICTED: uncharacterized protein LOC104605810 isoform X1 | ||||
| Refseq | XP_019054728.1 | 1e-121 | PREDICTED: uncharacterized protein LOC104605810 isoform X2 | ||||
| TrEMBL | A0A1U8Q7G9 | 1e-120 | A0A1U8Q7G9_NELNU; uncharacterized protein LOC104605810 isoform X1 | ||||
| STRING | Aquca_082_00024.1 | 4e-63 | (Aquilegia coerulea) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G17570.3 | 3e-37 | GATA transcription factor 26 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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