PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_014573-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 25160.7 Da PI: 9.4633 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 96.4 | 3.4e-30 | 47 | 134 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka+++vk+ek+gkw+v+++++eHnH+l+ NNU_014573-RA 47 FYDAYATHLGFVMRVDAFRRSLRDGKVICRRLVCNKEGFRRNRPRR-SESRKPRAITREGCKAMIMVKREKTGKWVVSRFVKEHNHPLV 134 9*******************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-27 | 47 | 134 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDGKHGVVEG TEIMESSNGK ELAVCEDEII EPYVGMEFES EEAAKVFYDA YATHLGFVMR 60 VDAFRRSLRD GKVICRRLVC NKEGFRRNRP RRSESRKPRA ITREGCKAMI MVKREKTGKW 120 VVSRFVKEHN HPLVISSSGN SRRSLLLSQT PDEKDKKIRE LSTELMRERK RSAAYQEQLQ 180 SVLKDIEEHT HHLSRNIEDI IQNVNDIESK RQVLSQS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268162.1 | 1e-160 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Swissprot | Q9SZL8 | 2e-29 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1U8ALE5 | 1e-158 | A0A1U8ALE5_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
STRING | XP_010268162.1 | 1e-159 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-80 | FAR1 family protein |
Publications ? help Back to Top | |||
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