PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014572-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 319aa MW: 36883.2 Da PI: 8.3216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014572-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.1	6.3e-28	153	242	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGF +r+ +s++s+r+g+i++r++ C+keg++ +++k + + r+r+++r gC a++ +k+ek gkw vtk+ ++HnH+l+ NNU_014572-RA 153 NFYDEYARHVGFVTRIVSSRRSERDGSIISRRLACNKEGFNLNSRKIGRVQIRKRESKREGCMAMILIKREKPGKWIVTKFMKDHNHPLM 242 6*****************************************99999999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-25	153	242	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGIKSRNLAF NSCFIRCHDL MAALPWQVVV VCNSSHKNTF CILDLAYLCF ALQDEKDKKI 60 QELTAELRRK KRLCAAYREQ LLMFMKDVED HTEQLSMKVQ LVVNNVLDLE NPVGDGTGTT 120 ERSAAADSAV YEGDPNPEPY EGMVFESEEA AKNFYDEYAR HVGFVTRIVS SRRSERDGSI 180 ISRRLACNKE GFNLNSRKIG RVQIRKRESK REGCMAMILI KREKPGKWIV TKFMKDHNHP 240 LMVSSGKDHP TPDEKDKKIR ELSLELHRAN QRLAACREQL HTFIRYIEEH TYHLSGTVDD 300 VVNNIKEIES RDKELSQYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	72	LRRKKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268157.1	1e-158	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X1
TrEMBL	A0A1U8ALE0	1e-156	A0A1U8ALE0_NELNU; protein FAR1-RELATED SEQUENCE 2-like isoform X1
STRING	XP_010268157.1	1e-157	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-59	FAR1 family protein