PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014536-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 142aa    MW: 15401.8 Da    PI: 10.2956
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014536-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.7e-203266135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  NNU_014536-RA 32 CTDCRTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 66
                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.65E-142566No hitNo description
PROSITE profilePS5011412.6372662IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-152676IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-163066IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.86E-143166No hitNo description
PfamPF003201.2E-173266IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MMDLSEKAQG SGSEDINTSL EESQANELKK SCTDCRTTKT PLWRGGPAGP KSLCNACGIR  60
YRKKRRAILG LNKGGSDKEK KESKSSGSRN NKLGVSLKQL NLLALGREVL LQRSMIAKQR  120
KLGEEEQAAV LLMALSCGSV YA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268075.12e-97PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ104e-41GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A1U8AK574e-96A0A1U8AK57_NELNU; GATA transcription factor 16-like
STRINGXP_010268075.17e-97(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-39GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]