PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_014525-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 201aa MW: 21990.7 Da PI: 7.626 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.7e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H NNU_014525-RA 54 FECQYCGREFGNSQALGGHQNAH 76 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.28E-6 | 50 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 51 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.487 | 54 | 81 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.4E-6 | 54 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MADPEIPVPM KPSSEDGNSD DISDRRSASV LKLFGFEVTE SDEVPATIQN SRKFECQYCG 60 REFGNSQALG GHQNAHKKER QRAKRAQFQS SRRFSAAVSP LLNPHAVRSG PFLYSGLPLG 120 IGAAAQLHSP TEYYASPPPM LSSLSSPRLP SWLYVSRPPQ FPVDPDVRPR PALSITQFSE 180 KMPEVEVGVD LHLSLAPSST S |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268055.1 | 1e-145 | PREDICTED: zinc finger protein 6-like | ||||
TrEMBL | A0A1U8AK38 | 1e-144 | A0A1U8AK38_NELNU; zinc finger protein 6-like | ||||
STRING | XP_010268055.1 | 1e-145 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G10970.1 | 3e-14 | C2H2 family protein |