PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014296-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 759aa    MW: 82828.3 Da    PI: 6.0564
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014296-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2092147156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  NNU_014296-RA  92 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 147
                    688999***********************************************999 PP
2START217.54.4e-682815011206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela +a++el+++a+++ep+Wv s     e++ +de++++f+++ +     +++ea+r++++v+ ++++lve l+d++ qW+  +     +a+tle
  NNU_014296-RA 281 ELAVAAMEELIRMAQLGEPLWVPSMdnstEILSEDEYIRTFPRGIGpkpstFKTEASRETAIVIINHVNLVEMLMDVN-QWSSVFSgivsRAMTLE 375
                    57899********************99999*************999********************************.***************** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    v+s+g      galq+m+ae+q+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p    v R++++pSg+li++++ng+skv+wvehv++
  NNU_014296-RA 376 VLSTGvagnynGALQVMTAEFQVPTPLVPtRESYFVRYCKQHADGTWAVVDVSLDHLRPGP----VLRCRRRPSGCLIQEMPNGYSKVIWVEHVEV 467
                    ************************************************************9....7****************************** PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++r +h+++r lv+  la+gak+w atl+rqce+
  NNU_014296-RA 468 DDRGVHSMYRGLVNCYLAFGAKRWIATLDRQCER 501
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-2375147IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1979149IPR009057Homeodomain-like
PROSITE profilePS5007116.97389149IPR001356Homeobox domain
SMARTSM003894.5E-2090153IPR001356Homeobox domain
CDDcd000862.46E-1991150No hitNo description
PfamPF000464.3E-1892147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084845.603272504IPR002913START domain
SuperFamilySSF559613.41E-37273503No hitNo description
CDDcd088753.81E-128276500No hitNo description
SMARTSM002342.1E-65281501IPR002913START domain
PfamPF018523.5E-56282501IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-6377500IPR023393START-like domain
SuperFamilySSF559618.55E-25521751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MPSGIMIPPR HVPPLMGMNG KVAGFSSSSG LTLGQAANML DGQQHQLEMT QTTPENEMAK  60
IRDDEFESKS GSENIEGGGS GDEQDPSQRP RKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ  120
RKELSRELGL EPLQVKFWFQ NKRTQMKTQH ERHENTHLRT ENEKLRAENM RYKEALSNAS  180
CPNCGGPTAL GEMSFDEHQL RLENARLREE IDKISGIAAK YVGKPLVSYP LISPPIPPRS  240
LDLGGGNFGA QPGVGGEMYG AGDLLRSVSG PIEADKPMII ELAVAAMEEL IRMAQLGEPL  300
WVPSMDNSTE ILSEDEYIRT FPRGIGPKPS TFKTEASRET AIVIINHVNL VEMLMDVNQW  360
SSVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPT PLVPTRESYF VRYCKQHADG  420
TWAVVDVSLD HLRPGPVLRC RRRPSGCLIQ EMPNGYSKVI WVEHVEVDDR GVHSMYRGLV  480
NCYLAFGAKR WIATLDRQCE RLASVMATNI PSGDIGVITS PDGRKSMLKL AERMVISFCS  540
GVSASTSHTW TTLSGSGAED VRVMTRKSID DPGRPPGIVL SAATSFWLPV PPKRVFDFLR  600
DENSRSEWDI LSNGGVVQEM AHIANGRDPG NCVSLLRVNS ANSSQSNMLI LQESCTDLTG  660
SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGST VHAGIGGVGS GGSLLTVAFQ  720
ILVDSVPTAK LSLGSVATVN SLIACTVDRI KAAVSCENA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267734.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_019054556.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1U8AWQ60.0A0A1U8AWQ6_NELNU; homeobox-leucine zipper protein HDG2-like isoform X1
STRINGXP_010267734.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]