PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_014172-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | Dof | ||||||||
Protein Properties | Length: 267aa MW: 29065.3 Da PI: 8.646 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.1 | 4.4e-39 | 22 | 82 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+st tkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss NNU_014172-RA 22 KEQALNCPRCNSTSTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 82 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-26 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.3E-33 | 24 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.956 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MEEVVSNACS RPMLERRAKP QKEQALNCPR CNSTSTKFCY YNNYSLTQPR YFCKTCRRYW 60 TEGGSLRNVP VGGGSRKNKR SSNSSASASS KKLPDLTPPT SSTSSSQNLK IHKGQDLNLA 120 FPYAQDFQAI SEFARVPKIE TTTNEDSPNP CSSSTATPSL SALELLRSGI TSRGLNSFMP 180 IPILDSNSFY PTGFALQDFK PSLGFSLDGL GVGGGYGNLQ GVEESSGRLL FPFEDLKQVS 240 NTNDIEQNRG QGDSTGYWNG TLGGGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010267517.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X2 | ||||
Swissprot | Q43385 | 2e-62 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A1U8AIJ9 | 0.0 | A0A1U8AIJ9_NELNU; dof zinc finger protein DOF2.5-like isoform X2 | ||||
STRING | XP_010267516.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 3e-48 | Dof family protein |