PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_014172-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 267aa MW: 29065.3 Da PI: 8.646

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_014172-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.4e-39	22	82	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+st tkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss NNU_014172-RA 22 KEQALNCPRCNSTSTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 82 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-26	18	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.956	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEEVVSNACS RPMLERRAKP QKEQALNCPR CNSTSTKFCY YNNYSLTQPR YFCKTCRRYW 60 TEGGSLRNVP VGGGSRKNKR SSNSSASASS KKLPDLTPPT SSTSSSQNLK IHKGQDLNLA 120 FPYAQDFQAI SEFARVPKIE TTTNEDSPNP CSSSTATPSL SALELLRSGI TSRGLNSFMP 180 IPILDSNSFY PTGFALQDFK PSLGFSLDGL GVGGGYGNLQ GVEESSGRLL FPFEDLKQVS 240 NTNDIEQNRG QGDSTGYWNG TLGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267517.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q43385	2e-62	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A1U8AIJ9	0.0	A0A1U8AIJ9_NELNU; dof zinc finger protein DOF2.5-like isoform X2
STRING	XP_010267516.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-48	Dof family protein