PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_014113-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRF
Protein Properties Length: 550aa    MW: 58251.8 Da    PI: 7.622
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_014113-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.8e-25200244145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e+
  NNU_014113-RA 200 DPEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVEQ 244
                    79****************************************997 PP
2QLQ51.72.7e-18138171235
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                    +FT aQ+q+L++Q+l+yKy++ ++ vPp+Ll++i
  NNU_014113-RA 138 PFTSAQWQELERQALIYKYMMGSVAVPPDLLMPI 171
                    8********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-9137173IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-13138171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.446138173IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.808200244IPR014977WRC domain
PfamPF088793.9E-21201243IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
METDSSRGSE GFVADMAAVL EPEETGGNRS GLKLQRTESL PHKMITTTVH PHHHSRTFPS  60
PLTESESGRG GGGGVSGHGP TFYRRSNNGI RSMSDIFDAV AGGGGAAAAA AAVARTLQPF  120
NSTAFKCPEG MAASLRFPFT SAQWQELERQ ALIYKYMMGS VAVPPDLLMP ITINLSDPVV  180
SHSTGGRGPC FNLRFSNSTD PEPGRCRRTD GKKWRCSRDV APDQKYCERH MHRGRPRSRK  240
PVEQQPESNN LNTRSPASAC LSNLTANTNN NPESSLFLSK VSPFQINISS SSNKDPRCAE  300
WMAKGEAVSL AASDQQLQQF MNSKVGLRTE NNTCNASLAS LDGSSVCNQR QTPRQFIDGW  360
STATRENITD TSGKSSVSLN GKLSLSSLSL FMSGGSGIGE EVDQINIGLG VMDPERDNGG  420
DIAKTQPLSW MNPVLWVPSS PPGGPLAEVL LPSSAASPSV GSNVASPPSC YRITGNNSSC  480
GGDLNLMSDG WGVSSDASSP RATSVSSPSC VVQKALASLS DSSGCSSPTF TTGVPKSEIA  540
LPWLNLNQSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267409.10.0PREDICTED: growth-regulating factor 7-like
RefseqXP_010267410.10.0PREDICTED: growth-regulating factor 7-like
RefseqXP_019054534.10.0PREDICTED: growth-regulating factor 7-like
TrEMBLA0A1U8AWN40.0A0A1U8AWN4_NELNU; growth-regulating factor 7-like
STRINGXP_010267408.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-38growth-regulating factor 5