PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013989-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 276aa    MW: 29805.1 Da    PI: 5.057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013989-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-0819412346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia++++ gRt++++k++w++
    NNU_013989-RA 19 RWSIIASRLP-GRTDNDIKNYWNT 41
                     7*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.394147IPR017930Myb domain
SuperFamilySSF466891.3E-71748IPR009057Homeodomain-like
PfamPF002492.2E-61841IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-121850IPR009057Homeodomain-like
CDDcd001672.16E-61943No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGISDISSSN GELISTKCRW SIIASRLPGR TDNDIKNYWN TKLKKKIMGM APSQRKAPHH  60
QPSLPTHLPM AVSSPSQSLS SSSSSYQGSR SYYNPSESVV GLEPISIPSN LLSNCNTYTT  120
TSTATATTST LLQAQDGFMS PMHNYQVKEG LLMFGGEPSC SSSDGSCNQI SYGKEMEYEY  180
GGSGGGGGGV GNGEQMGLES FSYTDVFDNQ KFMIGGNVYG GCGLDGWTPS QKPNDQMLVE  240
PPLDYGLEEI KQLVSSNGCS NLWFDENKTQ GRGMYY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267204.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A1U8AW580.0A0A1U8AW58_NELNU; transcription factor MYB3-like
STRINGXP_010267204.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-14myb domain protein 36