PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013977-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 827aa    MW: 90813 Da    PI: 6.5907
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013977-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181977357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  NNU_013977-RA 19 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                   5679*****************************************************97 PP
2START180.97.5e-571633712205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ +g  g+++l +
  NNU_013977-RA 163 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTGngGTIELLY 257
                    789*******************************************************.8888888888*************************** PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q  p+    +++vR+e+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  NNU_013977-RA 258 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLSNTQGGPSmptVQNFVRGEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 353
                    ******************************************9988889*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++kt++a+l+++++
  NNU_013977-RA 354 STVLAQKTTMAALRHLRQ 371
                    *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-19877IPR009057Homeodomain-like
PROSITE profilePS5007115.7581478IPR001356Homeobox domain
SMARTSM003892.8E-151682IPR001356Homeobox domain
CDDcd000869.11E-171979No hitNo description
SuperFamilySSF466894.71E-171982IPR009057Homeodomain-like
PfamPF000462.9E-162077IPR001356Homeobox domain
CDDcd146861.13E-671110No hitNo description
PROSITE profilePS5084826153381IPR002913START domain
CDDcd088751.56E-81157373No hitNo description
SuperFamilySSF559611.65E-38162374No hitNo description
Gene3DG3DSA:3.30.530.202.1E-23162368IPR023393START-like domain
SMARTSM002344.1E-43162372IPR002913START domain
PfamPF018522.1E-54163371IPR002913START domain
SuperFamilySSF559616.46E-5399494No hitNo description
SuperFamilySSF559616.46E-5522584No hitNo description
PfamPF086707.5E-52684826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MMAVTASCKD GKGGMENGKY VRYTPEQVEA LERLYHECPK PSSIRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYFR  120
QQTQSTALAT TDTSCESVVT SGQHHLTPQH PPRDASPAGL LSIAEETLTE FLSKATGTAV  180
EWVQMPGMKP GPDSIGIVAI SHGCTGVAAR ACGLVGLEPT RVAEILKDRP SWFRDCRAVD  240
VLNVLPTGNG GTIELLYMQL YAPTTLAPAR DFWLLRYTSV LEDGSLVVCE RSLSNTQGGP  300
SMPTVQNFVR GEMLPSGYLI RPCEGGGSII HIVDHMDLEP WSVPEVLRPL YESSTVLAQK  360
TTMAALRHLR QIAQEVSQST VTGWGRRPAA LRALSQRLSR GFNEALNGFT DEGWSMMGND  420
GMDDVTILVN SSPSKVMGVN LTFGSGFPAM NNSVLCAKAS MLLQNVPPAI LLRFLREHRS  480
EWADSNIDAY SAASLKAGPC SLPGSRLGSF GGQFLEVIKL ESIGHCQEDP MMPRDMFLLQ  540
LCSGVDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDTGVDASSP NRTLDLASAL  600
EVGTAGNRIS GDYSGNTGNM RSVMTIAFQF AFESHLQENV ASMARQYVRS IISSVQRVAL  660
ALSPSRLSSH SGLRPPPGTP EAHTLARWIC HSYRNFLGVE LLKPSSEGSE SILKTLWHHQ  720
DAIMCCSLKA LPVFTFANQV GLDMLETTLV ALQDITLEKI FDDHGRKTLC SEFPQIMQQG  780
FACLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFL FVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267183.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
RefseqXP_010267184.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1U8AW350.0A0A1U8AW35_NELNU; homeobox-leucine zipper protein ATHB-15-like
STRINGXP_010267183.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]