PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013929-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 428aa    MW: 48080.5 Da    PI: 7.0877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013929-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.84.3e-36461881128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........s 80 
                    lp+G++F+Ptd+el+ e+L++kvegk+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        +
  NNU_013929-RA  46 LPAGVKFDPTDQELI-EHLEAKVEGKDskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggD 139
                    799************.99********96665443333333666646**********.555666799******************733345555447 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  NNU_013929-RA 140 TRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188
                    78************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3842207IPR003441NAC domain
PROSITE profilePS5100532.68646207IPR003441NAC domain
PfamPF023651.7E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNKTHIGSVS SSDLIDAKLE EHQMCGSKQC PGCGHKLERK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEGK DSKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGDT RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA TTGEGSGEPH RRDSGSGSCS  240
SSKDVSAQRD ELSGAGSVIS AYSAMDIQQM KSDHFSFGPF RKSFDEVGMG EASKAREVTA  300
ARTCEEHDHQ GLHQMTHEQH QHHHHQVATT AFHVSRPSLP LSTIISPLHH TSIVLDEDPY  360
HVSRIILQNQ QQQQQHKLGG RSASGLEEML LGCTSTDIKE ESSITNPQEA EWLKYSFWPD  420
AGNPDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-134418813140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267098.10.0PREDICTED: uncharacterized protein LOC104604461 isoform X2
SwissprotQ9M0F81e-140NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1U8AM180.0A0A1U8AM18_NELNU; uncharacterized protein LOC104604461 isoform X2
STRINGXP_010267095.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-142NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]