PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013688-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 509aa MW: 55428.7 Da PI: 5.3823

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013688-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	115	175	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s NNU_013688-RA 115 PDKVLPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHSA 175 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	103	172	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	116	173	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	119	173	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	121	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MSEIKDPAIK LFGKRIPLME SQIPAESCDK SDPECLVAPE AEEEAGEXKE TTKVEDEELS 60 PRESCKPDKS YNLNNSKEDD HQTSSEGNKA TTVPKPEEDH AESDVPSQDK VLKKPDKVLP 120 CPRCNSLDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKHSASQYRQ 180 AMMSADGIPT TRVDNPDSPT HQVLACGGLS TSSKPLKGNG TVLKFGLDAP VCESMATVLN 240 LVDQKRKADI GSAACEENGV EPPSVSSMAA SCQENELPEN VPKMEQTNIL GSVNGFTSPH 300 PLPYYPVPPW TCPWNPSWNN IAVMAVNRCS SEVFYGPDSS IPNPVQWGSP PMVAAPAFCT 360 PRIPFPFVPA SYWGCVPSWA ARPWNVPWLG SNGSLSPSSS TSNSGCSGNG SPTLGKHCRD 420 ANPQVEEKSE KSLWVPKTLR IDDPDEAAKS SIWATLGIKT DQNESIAKGG MFKAFQPKTE 480 SNIHDSDATQ VLQANPAALS RSQTFQEST

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MSEIKDPAIK LFGKRIPLME SQIPAESCDK SDPECLVAPE AEEEAGEXKE TTKVEDEELS  60
PRESCKPDKS YNLNNSKEDD HQTSSEGNKA TTVPKPEEDH AESDVPSQDK VLKKPDKVLP  120
CPRCNSLDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKHSASQYRQ  180
AMMSADGIPT TRVDNPDSPT HQVLACGGLS TSSKPLKGNG TVLKFGLDAP VCESMATVLN  240
LVDQKRKADI GSAACEENGV EPPSVSSMAA SCQENELPEN VPKMEQTNIL GSVNGFTSPH  300
PLPYYPVPPW TCPWNPSWNN IAVMAVNRCS SEVFYGPDSS IPNPVQWGSP PMVAAPAFCT  360
PRIPFPFVPA SYWGCVPSWA ARPWNVPWLG SNGSLSPSSS TSNSGCSGNG SPTLGKHCRD  420
ANPQVEEKSE KSLWVPKTLR IDDPDEAAKS SIWATLGIKT DQNESIAKGG MFKAFQPKTE  480
SNIHDSDATQ VLQANPAALS RSQTFQEST

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253543	3e-50	AC253543.1 Prunus persica cultivar Lovell clone JGIBIXB-13M5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266732.1	0.0	PREDICTED: cyclic dof factor 3-like
Refseq	XP_010266734.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1U8AGH6	0.0	A0A1U8AGH6_NELNU; cyclic dof factor 3-like
STRING	XP_010266732.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-48	cycling DOF factor 2