PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013383-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 369aa MW: 41687.2 Da PI: 6.0504

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013383-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.9	4.8e-54	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+++yL+ kv + +++ i+evd++++ePw+Lp +k +e+ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ev+s+ NNU_013383-RA 21 LPPGFRFHPTDEELITFYLASKVFKGSFSG-VEIAEVDLNRCEPWELPDIAKMGEREWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREVYSAs 115 79***********************999.45***********8788899**********************************997 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfykgrap+gekt+Wvmheyrl NNU_013383-RA 116 NGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-63	16	170	IPR003441	NAC domain
PROSITE profile	PS51005	60.053	21	170	IPR003441	NAC domain
Pfam	PF02365	8.9E-28	22	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MLAMEEILCE VHGEDTNEQG LPPGFRFHPT DEELITFYLA SKVFKGSFSG VEIAEVDLNR 60 CEPWELPDIA KMGEREWYFF SLRDRKYPTG LRTNRATEAG YWKATGKDRE VYSASNGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFAYHHTCKE EWVICRIFHK TGEKKSSFFQ 180 AQSYLLETFS SPSTSLPPQM EPQVTLMGIQ SLQNPYFVTQ QQGITELEFL INPVVTHQPQ 240 VSTMSSLQEA SFSPNTINPN NPSQSNLLIK SLLSHQECSL KESAVHKQCK TESMLSHFQP 300 MDANLHWGDK IHQSPCQNPM FFEMGCGGVV GFTAVADSVH ETSTSVAFNR AGFEMVLDPP 360 IRSLGECGP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MLAMEEILCE VHGEDTNEQG LPPGFRFHPT DEELITFYLA SKVFKGSFSG VEIAEVDLNR  60
CEPWELPDIA KMGEREWYFF SLRDRKYPTG LRTNRATEAG YWKATGKDRE VYSASNGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFAYHHTCKE EWVICRIFHK TGEKKSSFFQ  180
AQSYLLETFS SPSTSLPPQM EPQVTLMGIQ SLQNPYFVTQ QQGITELEFL INPVVTHQPQ  240
VSTMSSLQEA SFSPNTINPN NPSQSNLLIK SLLSHQECSL KESAVHKQCK TESMLSHFQP  300
MDANLHWGDK IHQSPCQNPM FFEMGCGGVV GFTAVADSVH ETSTSVAFNR AGFEMVLDPP  360
IRSLGECGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-51	21	170	20	168	NAC domain-containing protein 19
3swm_B	9e-51	21	170	20	168	NAC domain-containing protein 19
3swm_C	9e-51	21	170	20	168	NAC domain-containing protein 19
3swm_D	9e-51	21	170	20	168	NAC domain-containing protein 19
3swp_A	9e-51	21	170	20	168	NAC domain-containing protein 19
3swp_B	9e-51	21	170	20	168	NAC domain-containing protein 19
3swp_C	9e-51	21	170	20	168	NAC domain-containing protein 19
3swp_D	9e-51	21	170	20	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266268.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-106	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A1U8AFB7	0.0	A0A1U8AFB7_NELNU; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_010266268.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-108	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]