PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013332-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Nin-like

Protein Properties

Length: 965aa MW: 106338 Da PI: 6.1287

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013332-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	640	690	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ NNU_013332-RA 640 EKTISLQALRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 690 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	629	710	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-25	642	690	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.07E-23	873	961	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.3E-25	873	955	No hit	No description
PROSITE profile	PS51745	28.375	874	957	IPR000270	PB1 domain
SMART	SM00666	8.9E-27	874	957	IPR000270	PB1 domain
CDD	cd06407	2.23E-42	875	955	No hit	No description
Pfam	PF00564	1.5E-19	875	956	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MEDGVFPRAT TLETVPETTG DFDIMDELLL EGCWLETIDG SDFLQPGSSI STDFFDSSCF 60 SPTPEINTGN MNAIPPKNGQ DKTNEPSFPE NPPDQFERQT EGAIRIQPEK PNAVEIAESS 120 GRAGSECCSA EANCELSKRW WIGPSSNLGP SVRERLMQAL GYIQESTKDS DVLIQIWVPV 180 KRGGKHVLTT DGQPFSLNPS SQRLANYRNV SLSYQFPAEE DSKETIGLPG RVFLGKVPEW 240 TPDVRFFRSD EFPRVDYAQR CDIRGTLALP VFERGSRTCL GVIEVVTTAQ KINYRPDVEN 300 VCRALQAVDL TSSEVSISSH LKGSSTSYQA VLPEILGVLK AVCETYKLSL AQTWVPCTQQ 360 GKGGCRHSDE NYAVCVSTVD SACYVTDPQM WGFHEACSEH HLFRGQGVAG RAFTTNQPCF 420 STDVTAFSKT EYPLSHYARI FGLRAAVAIR LRSISTGSID YVLEFFLPVD CMGTEEQRVM 480 LNSLSTIVQR VCQSLRVVTD KEIEDEAGFP VHEVAVPSNE SPEQKIATGL GSTGFKGSSE 540 EEPSWITHMM ESQKKGESFP LIFQKEEPNS EFKITTHWQN PGLVFHQGET FSEYKQHRQD 600 SRPKNVAEPE CGGNSSAFGF GERSSSSGGK TGNKRRTKTE KTISLQALRQ YFAGSLKDAA 660 KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLRKLQVV IDSVQGAEGV FQIGSLYSNF 720 PELTSPNLSG DSPFSTSQLN QDSKPPLTLN TQTDGAISSP LAPASTTKSP SSPCSQSSES 780 SHCISSGKEQ HLSAQISGGE DISMAEKAGT VLKRARSDAE LHASSQEEEQ RPPAKSHSQK 840 SLGEHPNPSL ENSLLQLPKT KSGSHVSLSR GVNAIRVKVT YGEEKIRFSL QSTWGFKDIQ 900 QEIARRFEID DTSRIDLKYL DDDSEWVLLT CDADLEECVH VYKSSRTRTI KLSVHRVSHP 960 RSSAG

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MEDGVFPRAT TLETVPETTG DFDIMDELLL EGCWLETIDG SDFLQPGSSI STDFFDSSCF  60
SPTPEINTGN MNAIPPKNGQ DKTNEPSFPE NPPDQFERQT EGAIRIQPEK PNAVEIAESS  120
GRAGSECCSA EANCELSKRW WIGPSSNLGP SVRERLMQAL GYIQESTKDS DVLIQIWVPV  180
KRGGKHVLTT DGQPFSLNPS SQRLANYRNV SLSYQFPAEE DSKETIGLPG RVFLGKVPEW  240
TPDVRFFRSD EFPRVDYAQR CDIRGTLALP VFERGSRTCL GVIEVVTTAQ KINYRPDVEN  300
VCRALQAVDL TSSEVSISSH LKGSSTSYQA VLPEILGVLK AVCETYKLSL AQTWVPCTQQ  360
GKGGCRHSDE NYAVCVSTVD SACYVTDPQM WGFHEACSEH HLFRGQGVAG RAFTTNQPCF  420
STDVTAFSKT EYPLSHYARI FGLRAAVAIR LRSISTGSID YVLEFFLPVD CMGTEEQRVM  480
LNSLSTIVQR VCQSLRVVTD KEIEDEAGFP VHEVAVPSNE SPEQKIATGL GSTGFKGSSE  540
EEPSWITHMM ESQKKGESFP LIFQKEEPNS EFKITTHWQN PGLVFHQGET FSEYKQHRQD  600
SRPKNVAEPE CGGNSSAFGF GERSSSSGGK TGNKRRTKTE KTISLQALRQ YFAGSLKDAA  660
KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLRKLQVV IDSVQGAEGV FQIGSLYSNF  720
PELTSPNLSG DSPFSTSQLN QDSKPPLTLN TQTDGAISSP LAPASTTKSP SSPCSQSSES  780
SHCISSGKEQ HLSAQISGGE DISMAEKAGT VLKRARSDAE LHASSQEEEQ RPPAKSHSQK  840
SLGEHPNPSL ENSLLQLPKT KSGSHVSLSR GVNAIRVKVT YGEEKIRFSL QSTWGFKDIQ  900
QEIARRFEID DTSRIDLKYL DDDSEWVLLT CDADLEECVH VYKSSRTRTI KLSVHRVSHP  960
RSSAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266179.1	0.0	PREDICTED: protein NLP4
Refseq	XP_010266180.1	0.0	PREDICTED: protein NLP4
TrEMBL	A0A1U8ASV7	0.0	A0A1U8ASV7_NELNU; protein NLP4
STRING	XP_010266179.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein