PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_013265-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 266aa MW: 30261.5 Da PI: 6.5088

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_013265-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.2	4.3e-08	1	43	38	83
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 mr+rg++rsp C+ekw++l ++ k+ ++++ +++ + s p+f+ NNU_013265-RA 1 MRDRGYRRSPDGCREKWRSLVRKLKNNQHHNHQHSRPPS---PFFR 43 899******************************976666...7776 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MRDRGYRRSP DGCREKWRSL VRKLKNNQHH NHQHSRPPSP FFRDSTFDSY HLNLETLQPI 60 PKGLESSTIT LQRSEGDGQS TNSVLSQECP SQSGRSAWGW RDDNSADVPQ WDSSMGCYPI 120 SSPLPAGHVI IVKWGEITRR IGIDGSADAI KDAIRSAFGL RSKRPFWVED DDGVVRSFDR 180 AMPQTTYTLH IDPGVTIKLY HYDECNGQAI SSEDATLYCE DDFHELLTRN GWQSLREVGT 240 YKDVESIQDL RPMASYHSSG IKELNM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266074.1	0.0	PREDICTED: trihelix transcription factor GT-1-like
TrEMBL	A0A1U8AT94	0.0	A0A1U8AT94_NELNU; trihelix transcription factor GT-1-like
STRING	XP_010266074.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	2e-48	Trihelix family protein