PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013135-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 666aa    MW: 72406.6 Da    PI: 6.5087
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013135-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14.1e-28151204155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  NNU_013135-RA 151 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVERLTRENVASHLQKYRL 204
                    79*******************.********************************8 PP
2Response_reg50.89e-1867341109
                    HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    ++++Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++ + + + +  Ga d+l Kp+  eel +
  NNU_013135-RA   6 RNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTNVVMKGITHGACDYLLKPVRLEELKN 73 
                    456*******************87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.975179IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.7E-1391666IPR017053Response regulator B-type, plant
CDDcd001561.73E-19578No hitNo description
PfamPF000723.4E-15673IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521725.27E-23684IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-28686No hitNo description
PROSITE profilePS5129412.23148207IPR017930Myb domain
SuperFamilySSF466891.56E-19148208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-30149209IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-25151204IPR006447Myb domain, plants
PfamPF002492.8E-6153203IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLRENRNKFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANSDTNVV MKGITHGACD  60
YLLKPVRLEE LKNIWQHVVR RKKFDSKGHN NSNHQEKPHH GDNEGGQGPT ATGNTERNGK  120
FNRKRKDQNE DEDEESEENG HENEDPSTQK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR  180
ILDLMNVERL TRENVASHLQ KYRLYLKRIS CVANQQANMV AALGVKDPSY LRMSSLDGLG  240
DFHSMNGSTQ LSNSSLVSFP PGVMLNRLNT PAGLGLRGLA SSGMIQLGRS QSPSNSNDLG  300
KFQQVSLSGN QKGNLLHGMP TSLDLDQLQQ SKGISCIGEF SSSVGDPKVF PVASSFSDNG  360
VAIGSSSNSF LGVANNHLVL QGHQQQTQNR GGLTNQSSVR VAPLNADPFD VSGSVSSHLP  420
DQGRLNGNWQ SAVPLTGFSS NSLPLSDPFN NGDLSSSCLR DDNSSNGSHL GSNPLNVSTA  480
SVVTASLQDS RRDVQCQAGS PSGNSVQHDN PKFLNFRGFG SCISQSMTYP SKQGWEDHKQ  540
DYTHGSNLMF RSLNSSLPSH GVVSPLNQSL GQNSVVCSTN TDANLVGQSN TGAPFILQNN  600
EIEKSVMDAT MKLNLLEQSR SQGEYISNNC GSLEDLVSAM IKRERDEVTL MDGDIGCDVY  660
PLGTCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-26147210164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265660.10.0PREDICTED: two-component response regulator ORR23-like isoform X1
TrEMBLA0A1U8ARM20.0A0A1U8ARM2_NELNU; two-component response regulator ORR23-like isoform X1
STRINGXP_010265660.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-107response regulator 12