PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_012983-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | GATA | ||||||||
Protein Properties | Length: 248aa MW: 26837.4 Da PI: 10.3519 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.9 | 2.8e-18 | 185 | 219 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C t++TplWR+gp g+k+LCnaCG++y+k+++ NNU_012983-RA 185 CAACETSTTPLWRNGPKGSKSLCNACGIRYKKEEK 219 9*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.914 | 179 | 215 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.9E-17 | 179 | 236 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-12 | 180 | 221 | No hit | No description |
CDD | cd00202 | 2.75E-12 | 184 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-16 | 184 | 220 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.0E-16 | 185 | 219 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MKEQDLLRRL EKFPGENPDI GVDCELRLGL SYSRPNPPQS QTNYRKIIYD SPPPPPSPPA 60 QVMGNYGMVN GNYGVMMNPR GASMNNGWGV NGSNQLTWLP AMVNHPSNNG NRRDGFSYYV 120 GSSSASGSNN PTVMNDFRRY AGAGAGAGGL LPIQMQRNNV TVMNNIIQMI PQPERPVAVG 180 PVKRCAACET STTPLWRNGP KGSKSLCNAC GIRYKKEEKK ASGSTDSPQK SKVGGSAKGR 240 DSTKKPKF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010265900.1 | 0.0 | PREDICTED: white collar 2 protein-like | ||||
Refseq | XP_019054321.1 | 0.0 | PREDICTED: white collar 2 protein-like | ||||
Refseq | XP_019054322.1 | 0.0 | PREDICTED: white collar 2 protein-like | ||||
Refseq | XP_019054323.1 | 0.0 | PREDICTED: white collar 2 protein-like | ||||
TrEMBL | A0A1U8Q8F1 | 0.0 | A0A1U8Q8F1_NELNU; white collar 2 protein-like | ||||
STRING | XP_010265900.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 4e-18 | GATA transcription factor 20 |